2024-12-25 REL RCSB RCSB RCSB 2024-07-15 2024-12-25 2024-12-25 2024-12-25 Not funded CryoEM structure of the APO-BAM complex in DDM detergent Sun D Tegunov D Payandeh J membrane protein, protein structure Sun D Storek KM Tegunov D Yang Y Arthur CP Johnson M Quinn JG Liu W Han G Girgis HS Alexander MK Murchison AK Shriver S Tam C Ijiri H Inaba H Sano T Yanagida H Nishikawa J Heise CE Fairbrother WJ Tan MW Skelton N Sandoval W Sellers BD Ciferri C Smith PA Reid PC Cunningham CN Rutherford ST Payandeh J The discovery and structural basis of two distinct state-dependent inhibitors of BamA. Nat Commun UK 15 8718 8718 2024 39379361 doi:10.1038/s41467-024-52512-1 2041-1723 9cnw FULLOVERLAP BamABCDE complex BamABCDE complex 0 1 2 3 4 5 Escherichia coli Outer membrane protein assembly factor BamA Escherichia coli 0.090643383 1 Escherichia coli LEVO MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRD GDTLLVQVKERPTIASITFSGNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNI DSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGNLAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYP RVQSMPEINDADKTVKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRLGFFETVDT DTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWLGTGYAVGINGTKNDYQTYAELSVTNPYFTV DGVSLGGRLFYNDFQADDADLSDYTNKSYGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSD QDNSFKTDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDDHKWVVLGRTRWGYGDG LGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNYDPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFIT PTPFISDKYANSVRTSFFWDMGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAE QFQFNIGKTW P0A940 Outer membrane protein assembly factor BamB Escherichia coli 0.041918945 1 Escherichia coli LEVO MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGL VKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE IDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQS DLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR P77774 Outer membrane protein assembly factor BamC Escherichia coli 0.036875277 1 Escherichia coli LEVO MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKAL DIRPPAQPLALVSGARTQFTGDTASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGR YQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAANAAQNRASTTMDVQSAADDTGLP MLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNMAVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFID PKGHTLTQSQNDALVAVFQAAFSK W8SZY2 Outer membrane protein assembly factor BamD Escherichia coli 0.027858349999999997 1 Escherichia coli LEVO MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA NSSNT C3SYV7 Outer membrane protein assembly factor BamE Escherichia coli 0.013530256
GLY E 114 - GLY E 115 is linker. HIS E 116- HIS E 123 is expression tag.
1 Escherichia coli LEVO MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQ PGHEGVTQQTLTLTFNSSGVLTNIDNKPALSGNGGHHHHHHHH A0A366UU94 singleParticle particle 8.0 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.8 1.8 GATAN K3 BIOQUANTUM (6k x 4k) 64.0 1 5LJO 2.6 FSC 0.143 CUT-OFF 556336 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_45764.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 306.7136 306.7136 306.7136 90.0 90.0 90.0 X Y Z -1.410019 2.6033556 0.000028298464 0.040893245 1.1981 1.1981 1.1981 0.164 AUTHOR emd_45764_msk_1.map emd_45764_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 306.7136 306.7136 306.7136 90.0 90.0 90.0 X Y Z -0.70015484 1.4308077 0.00069655373 0.03792123 1.1981 1.1981 1.1981 AUTHOR emd_45764_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 306.7136 306.7136 306.7136 90.0 90.0 90.0 X Y Z -0.6488473 1.5642395 0.00070316106 0.03786359 1.1981 1.1981 1.1981 AUTHOR