2024-05-15 REL PDBe PDBe PDBe 2019-01-17 2019-02-20 2020-08-05 2024-05-15 Near Atomic Structure of an Atadenovirus Shows a possible gene duplication event and Intergenera Variations in Cementing Proteins Condezo GN Marabini R adenovirus atadenovirus virus evolution, VIRUS Marabini R Condezo GN Krupovic M Menendez-Conejero R Gomez-Blanco J San Martin C Near-atomic structure of an atadenovirus reveals a conserved capsid-binding motif and intergenera variations in cementing proteins. Sci Adv US 7 2021 33789897 doi:10.1126/sciadv.abe6008 2375-2548 Marabini R Condezo GN Gomez-Blanco J San Martin C Near Atomic Structure of an Atadenovirus Reveals a Conserved Capsid-Binding Motif and Intergenera Variations in Cementing Proteins Biorxiv US 2020 doi:10.1101/2020.07.24.220046 2692-8205 6qi5 FULLOVERLAP Lizard adenovirus 2 Lizard adenovirus 2 0 1 2 3 4 5 Lizard adenovirus 2 Heloderma horridum 150 940.0 25 VIRION SPECIES false false Hexon protein Lizard adenovirus 2 0.10186192999999999 12 LEVO MEPQREFFHIAGRSAKEYLSENLVQFIQATQNYFNIGEKFRDPYVAPSAGVTTDRSQKLQLRVVPIQTEDNVNYYKARFT LNVGDNRLVDLGSSYFDIKGTLDRGPSFKPYGGTAYNPLAPKSAPINSAFTVGNDTHFVAQLPQTYAAGGTGVTEAIQQQ VSGVDPNPQVGQPNYAGPVVVNTTNNAGLGRIVSADSEGQQFPCYGAYAPPQSAGGDVSTAAVTKTYINTTNNNGRVSGT MATDTITWENPDAHFADFVDDRRATAAGNRPNYIGFRDNFIGMMYYNSGSNTGSFSSQTQQLNIVLDLNDRNSELSYQYL LADLTSRWHYFALWNQAVDDYDHHVRILENDGYEEGPPNLAFPPHVISNPFAPAAVGTGMTVNEQQQTAAVTANTVALIG YGNIPAVEMNLPANLKRTFLYSNVAMYLPDTYKFTPANVDLPENHLSYGYINGRLPLPNIVDTWTDIGARWSLDVMDTVN PFNHHRNTGLKYRSQLLGNGRYCDFHIQVPQKFFAIKNLLLLPGTYNYEWYFRKDPNMVLQSTLGNDLRADGASITYTQI NLYVSFFPMNYDTQSELELMLRNATNDQNFSDYLGAVNNLYQIPAGSSTVVVNIPDRSWGAFRGWSFTRLKVSETPRIGA TQDPNFQYSGSIPYLDGTFYLSHTFQRCSIQWDSSVPWPGNDRMLTPNWFEIKRPINQDAEGNDTMQSNLTKDFFMVQMA ASYNQGYQGFNWPNCTKHYGFINNFEPMSRQVPEYGANYPNLMAAYLANPQTMPIWNNCGFQQKTATNVLLERCGHPYVA NWPYPLSGRNAVPNQVTERKFLVDRYLWQIPFSSNFLNMGTLTDLGQNVMYANSSHSLNMQFTVDPMTEPTYLMLLFGVF DQVVINQPTRSGISVAYLRLPFASGSAAT A0A076FYV7 Protein LH3 Lizard adenovirus 2 0.04115834399999999 4 LEVO MTSVEELYVINPINQWPAPGSFSSQKPPGTLLPGEDPEAVFKQYHVVYLVPGAQYHWKNILIEKPVWIYGNGATVRTSGT GPILRIVGNRTEKRDVRIQDISFFGEDCTPNRMEPMSEKLVYQMAIWVTDMKRVTIKGCNFTNFAGAAVFFEETAYNGFF WSMQHLITECRFTGCRIGIANGGRSEYSTASFNNFFDCQICFNVVGGNWNRCGNIAANCRCVYLHTTNMWYEGAGGNFNA AHGSFTGNTMNHCDYGGNLWPTAFQLPDREIQLAGFYFDNARARCPTWTGNTQYYGDMKILNFNQANDAAIFVIDGCALY GQPGDTGSIETTAALTDKVFIQGCQGNKVTLFNIKAANVVPAIGTIKQKP A0A076FYU8 Pre-hexon-linking protein VIII Lizard adenovirus 2 0.030744453 2 LEVO MDAPVTPYIWQYQPQTGKAAGARQNYGAVINWLSADNNMFHRVQTVNRARNLIDEIREETVRPDLAASFNDWTYDQLTQP PGTAYLPAPDPLTGPTTIRDKVLSAEGEQLAGSRPSVLHGGASLPPSAYSLGDGREYMKLTRDALPFPQNWMVKENGVWT PIVEQRAALRGGSANALSSYPTLLFNQPPILRYRRPGQQLQGSGVIAPSSKVLSLLSEAPRIPRTEGMTPYQFANSFPPV VYEDPFSQNLAVFPKEFSPLFEPENQVLASSLATLQYN A0A076FT36 PIIIa Lizard adenovirus 2 0.067049266 1 LEVO MDPGLKPSSLWTHKIIDSIIANRSLSAVQNFRKQPLANKLTALEDAIVQPRKDTTPETVAAILQELVAMGALQPNEVGPM FSDLMIRVHKYNSTNVQNNLSVLLGDIRAAQSEAIRSTNVGELSNQVVLNDFLSREPAVVPQGQHNYEAFKQTLRLMVNE APNVTLFKSGPDTLMQVNIRGVNTVNLNSAFKNLKNFWGVQLDTEIVPGSISSKLSSNTRVLLLFLAPFTNDSTFTPDTF ISQIMRLYRETVAASIEQPQETELEVAETIRELGGDVEDIGRTMAFLLKNKEEIVSNPRTLSPRQLNVLRYVQESLQDRI DRNGEEPEDALRNLVFSFAPSYFEANGPFIRRLISYLEVALINSPNYFREIYSNKYWTPPASFWTQNYGDFHLEREAEAE RRAASEAGYGDFEEGDFALPDNLGEGSDLAWDDFNTAMSPSVPPTPSVRSAPASLSYGRTSPSSVSSLTASDRNIGATLA RAVIPPAAAAIGSAAGEALYPSLGQYLAPAASLAATRLLNLTRARRQRLKRDSLARHRRITEVRGVYPKAAPTRSSSSSS VSSTPTVFEPLPGAFSVINPLMRPEGDRDVSGTGIVNPFSHLKPRNGLQ A0A076FYV2 Penton protein Lizard adenovirus 2 0.050619847999999995 1 LEVO MEVYVPPPRVMAPTEGRNSISYNPIAPLQDTTHIYIIDNKTSDIENLNIHKDHSNFYTNIVQNVDVAPSDAATQTIKLDE RSRWGGELHTILKTNAPNVTEFFNSNSFKALLMSDKTDPANPVYTWFELSIPEGDYTVGSLIDMLNNAVVENYLEVGRQK GVQISDIGVKFDTRNFSLGRDPLTSLVTPGNYTFKAFHPDIVLLPGCGVDFTHSRINNMLGMRKRFPYEPGYVITYEDLV GGNIPALLDLAKYPGETSPVLQDPDGNSYHVEEVSPKKWQTKYRSWCLAYNSSQGTLKSEQILTVPDITGGLGQLYWSLP DAFKPPVTFTNNTTDISTQPVTGMHLFPLSQRIVYNTSAVYAQLVEQMTNNTKVFNRFPKNAILMQPPYDTTQWISENVP YVADHGIQPLKNSLTGVQRVTLTDDRRRSCPYIYKTLATVTPKVLSSATLQ A0A076FT28 singleParticle particle 7.4
PBS
 Quantifoil R2/4 COPPER/RHODIUM ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI FALCON II (4k x 4k) INTEGRATING 2.0 54.0 1 I 3.4 FSC 0.143 CUT-OFF RELION Scipion 16071 MAXIMUM LIKELIHOOD RELION Scipion MAXIMUM LIKELIHOOD RELION Scipion emd_4551.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 780 780 780 -390 -390 -390 780 780 780 1053.0 1053.0 1053.0 90.0 90.0 90.0 X Y Z -0.2957798 0.5360727 0.0033348403 0.038650833 1.35 1.35 1.35 0.04 AUTHOR Cryo-EM structure of a lizard atadenovirus, LAdV-2, at 3.4 A resolution