2025-03-19 REL RCSB INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation em_admin _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_PubMed _citation.title _em_admin.last_update RCSB RCSB 2024-06-14 2025-02-12 2025-02-12 2025-03-19 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM122510 United States National Science Foundation (NSF, United States) CHE 2203937 United States Cryo-EM structure of the C1q A, B-crt, C peptide assembly narrow region Kreutzberger MA Yu LT Egelman EH Hartgerink JD C1q, complement, collagen, triple helix, IMMUNE SYSTEM Kreutzberger MAB Yu LT Bui TH Hancu MC Purdy MD Osinski T Kasson PM Egelman EH Hartgerink JD A Collagen Triple Helix without the Superhelical Twist. Acs Cent.Sci. US 11 331 345 2025 40028357 doi:10.1021/acscentsci.5c00018 2374-7951 9c9l FULLOVERLAP Narrow region structure of the octadecameric C1q A, B-crt, C peptide assembly Narrow region structure of the octadecameric C1q A, B-crt, C peptide assembly 0 1 2 3 Homo sapiens 70 Peptide from Complement C1q subcomponent subunit B Homo sapiens 0.0012504 6 LEVO P(HYP)AI(HYP)GI(HYP)GI(HYP)GT P02746 Peptide from Complement C1q subcomponent subunit A Homo sapiens 0.001258363 6 LEVO APDGKKGEAGR(HYP)G P02745 Peptide from Complement C1q subcomponent subunit C Homo sapiens 0.0013135019999999998 6 LEVO GI(HYP)GM(HYP)GL(HYP)GA(HYP)GK P02747 singleParticle particle 7.4
20 mM PBS
 ETHANE 100 295 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 3.0 FEI TITAN KRIOS AUTOGRID HOLDER GATAN K3 (6k x 4k) 60.0 1 3.7 FSC 0.143 CUT-OFF 374558 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_45363.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 289 289 289 0 0 0 289 289 289 289.0 289.0 289.0 90.0 90.0 90.0 X Y Z -0.20163742 13.552288000000001 0.003928212 0.17507961 1.0 1.0 1.0 5.4 AUTHOR This is the primary map that should be view for interpretation of our atomic modeling results. Achieved after filtering, masking out the uninterpretable density and then sharpening with EM ready. emd_45363_msk_1.map emd_45363_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 216 216 216 0 0 0 216 216 216 289.44 289.44 289.44 90.0 90.0 90.0 X Y Z -14.355013 18.840197 -0.00087868056 0.19057065 1.34 1.34 1.34 AUTHOR This is the initial sharpened map from cryoSPARC emd_45363_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 216 216 216 0 0 0 216 216 216 289.44 289.44 289.44 90.0 90.0 90.0 X Y Z -1.2370802 2.5990033 0.0005442308 0.02241442 1.34 1.34 1.34 AUTHOR This is the map prior to sharpening by EMReady. Achieved by low pass filtering the initial map and then cutting out the density with a mask generated from preliminary model. emd_45363_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 216 216 216 0 0 0 216 216 216 289.44 289.44 289.44 90.0 90.0 90.0 X Y Z -1.2752342 2.3819807 -0.00009372769 0.03226806 1.34 1.34 1.34 AUTHOR This is half map B from cryoSPARC emd_45363_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 216 216 216 0 0 0 216 216 216 289.44 289.44 289.44 90.0 90.0 90.0 X Y Z -1.3051661 2.349223 -0.00007801546 0.032254837 1.34 1.34 1.34 AUTHOR This is the half map A from cryoSPARC