TCR - CD3 complex bound to HLA

2025-12-31 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY citation citation_author em_admin _em_admin.last_update DATABASE_REFERENCES citation citation_author em_admin _em_admin.last_update RCSB RCSB 2024-05-31 2024-10-02 2024-10-02 2025-12-31 National Institutes of Health/National Cancer Institute (NIH/NCI) T32CA9207 United States National Institutes of Health/National Center for Advancing Translational Sciences (NIH/NCATS) KL2TR001865 United States National Institutes of Health/National Center for Advancing Translational Sciences (NIH/NCATS) UL1TR001866 United States Other private Black Family Metastasis Center Shapiro-Silverberg Fund for the Advancement of Translational Research United States The Mark Foundation Walz-Notti Aspire United States TCR - CD3 complex bound to HLA Notti RQ Walz T T-cell receptor, TCR, 1G4, nanodisc, CD3, HLA, NY-ESO-1, IMMUNE SYSTEM Notti RQ Yi F Heissel S Bush MW Molvi Z Das P Molina H Klebanoff CA Walz T The resting and ligand-bound states of the membrane-embedded human T-cell receptor-CD3 complex. Nat Commun UK 16 10996 10996 2025 41402338 doi:10.1038/s41467-025-66939-7 2041-1723 Notti RQ Yi F Heissel S Bush MW Molvi Z Das P Molina H Klebanoff CA Walz T The resting and ligand-bound states of the membrane-embedded human T-cell receptor-CD3 complex. Biorxiv US 2024 37662363 doi:10.1101/2023.08.22.554360 2692-8205 9c3e FULLOVERLAP PDB 9BBC unspecified

TCR - CD3 complex in detergent

PDB 8TW4 unspecified

TCR - CD3 complex in nanodisc, conformation ND-I

PDB 8TW6 unspecified

TCR - CD3 complex in nanodisc, conformation ND-II

EMDB EMD-45166 associated EM volume

TCR - CD3 complex bound to HLA

TCR - CD3 complex in nanodisc bound to NY-ESO-1, B2M, HLA-A*02:01 single chain trimer TCR - CD3 complex in nanodisc bound to NY-ESO-1, B2M, HLA-A*02:01 single chain trimer 0 1 2 3 4 5 6 7 Homo sapiens TCRa Homo sapiens 0.030214032999999998 1 Homo sapiens LEVO METLLGLLILWLQLQWVSSKQEVTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGR LNASLDKSSGRSTLYIAASQPGDSATYLCAVRPLYGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRDSKSSDKSVCLFTD FDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESSCDVKLVEKSFETD TNLNFQNLSVIGFRILLLKVAGFNLLMTLRLW TCRb (EGFP fusion) Homo sapiens 0.062121918 1 Homo sapiens LEVO MSIGLLCCAALSLLWAGPVNAGVTQTPKFQVLKTGQSMTLQCAQDMNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVP NGYNVSRSTTEDFPLRLLSAAPSQTSVYFCASSYVGNTGELFFGEGSRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKAT LVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYCLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDE WTQDRAKPVTQIVSAEAWGRADCGFTSESYQQGVLSATILYEILLGKATLYAVLVSALVLMAMVKRKDSRGVEDTMGVSK GEELFTGVVPILVELDGDVNGHKFSVSGEGEGDATYGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDF FKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNYNSHNVYIMADKQKNGIKV NFKIRHNIEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYKVD T-cell surface glycoprotein CD3 delta chain Homo sapiens 0.013836026 1 Homo sapiens LEVO MEHSTFLSGLVLATLLSQVSPFKIPIEELEDRVFVNCNTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDIYK DKESTVQVHYRMCQSCVELDPATVAGIIVTDVIATLLLALGVFCF P04234 T-cell surface glycoprotein CD3 epsilon chain Homo sapiens 0.023174227 2 Homo sapiens LEVO MQSGTHWRVLGLCLLSVGVWGQDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDED HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARVCENCMEMDVMSVATIVIVDICITGGLLLLVYYWSKNRKAKAK PVTRGAGAGGRQRGQNKERPPPVPNPDYEPIRKGQRDLYSGLNQRRI P07766 T-cell surface glycoprotein CD3 gamma chain Homo sapiens 0.022041098000000002 1 Homo sapiens LEVO MEQGKGLAVLILAIILLQGTLAQSIKGNHLVKVYDYQEDGSVLLTCDAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD PRGMYQCKGSQNKSKPLQVYYRMCQNCIELNAATISGFLFAEIVSIFVLAVGVYFIAGQDGVRQSRASDKQTLLPNDQLY QPLKDREDDQYSHLQGNQLRRNVEHHHHHHHHVD P09693 T-cell surface glycoprotein CD3 zeta chain Homo sapiens 0.018723438999999998 2 Homo sapiens LEVO MKWKALFTAAILQAQLPITEAQSFGLLDPKLCYLLDGILFIYGVILTALFLRVKFSRSADAPAYQQGQNQLYNELNLGRR EEYDVLDKRRGRDPEMGGKPQRRKNPQEGLYNELQKDKMAEAYSEIGMKGERRRGKGHDGLYQGLSTATKDTYDALHMQA LPPR P20963 Cancer/testis antigen 1,Beta-2-microglobulin,MHC class I antigen Homo sapiens 0.062221281 1 Homo sapiens LEVO SLLMWITQV(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) IQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC RVNHVTLSQPKIVKWDRD(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) SHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTL RGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLE GTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTF QKWAAVVVPSGQEQRYTCHVQHEGLPKP P78358 P61769 H9BNV4 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 8 NAG CHOLESTEROL 0.000386654 2 CLR singleParticle particle 0.7 7.5 150.0 NaCl Sodium Chloride 25.0 HEPES Quantifoil R1.2/1.3 COPPER 400 GRAPHENE OXIDE GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.0 0.8 2.5 64000.0 GATAN K3 (6k x 4k) 51.0 1 NONE 3.5 FSC 0.143 CUT-OFF 155000 NOT APPLICABLE NOT APPLICABLE emd_45166.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 432.00003 432.00003 432.00003 90.0 90.0 90.0 X Y Z -0.81659305 1.8292356 -0.00022109167 0.029878858 1.08 1.08 1.08 0.3 AUTHOR ::::EMDATABANK.org::::EMD-45166:::: emd_45166_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 432.00003 432.00003 432.00003 90.0 90.0 90.0 X Y Z -0.05171531 1.9180025 0.0003464163 0.011582179 1.08 1.08 1.08 AUTHOR ::::EMDATABANK.org::::EMD-45166:::: 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