<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_10_1/emdb.xsd" version="3.0.10.1" emdb_id="EMD-45145">
    <admin>
        <current_status>
            <date>2025-04-09</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2024-05-30</deposition>
            <header_release>2025-04-09</header_release>
            <map_release>2025-04-09</map_release>
            <update>2025-04-09</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</funding_body>
                <code>R01 AI136621</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</funding_body>
                <code>UM1 AI10066</code>
                <country>United States</country>
            </grant_reference>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)</funding_body>
                <code>UM1 AI144462</code>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>nsEM map of macaque 32647 week 18 polyclonal Fab in complex with BG505 v5.2 Boost #2 immunogen</title>
        <authors_list>
            <author ORCID="0000-0002-7170-6866">Pratap PP</author>
            <author ORCID="0000-0002-3364-3083">Cottrell CA</author>
            <author ORCID="0000-0001-7153-3769">Ward AB</author>
        </authors_list>
        <keywords>HIV-1, Env, NHP, Antibody, Fusion Peptide, Polyclonal, VIRAL PROTEIN, VIRAL PROTEIN-Immune System complex</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0002-3364-3083" order="1">Cottrell CA</author>
                    <author order="2">Pratap PP</author>
                    <author order="3">Cirelli KM</author>
                    <author order="4">Carnathan DG</author>
                    <author order="5">Enemuo CA</author>
                    <author ORCID="0000-0001-9452-8954" order="6">Antanasijevic A</author>
                    <author ORCID="0000-0002-9695-8138" order="7">Ozorowski G</author>
                    <author order="8">Sewall LM</author>
                    <author ORCID="0000-0002-2468-8589" order="9">Gao H</author>
                    <author ORCID="0000-0003-2547-968X" order="10">Allen JD</author>
                    <author order="11">Nogal B</author>
                    <author order="12">Silva M</author>
                    <author order="13">Bhiman J</author>
                    <author order="14">Pauthner M</author>
                    <author ORCID="0000-0002-8637-1405" order="15">Irvine DJ</author>
                    <author order="16">Montefiori D</author>
                    <author ORCID="0000-0002-1072-2694" order="17">Crispin M</author>
                    <author ORCID="0000-0001-6711-9864" order="18">Burton DR</author>
                    <author order="19">Silvestri G</author>
                    <author ORCID="0000-0002-6484-6262" order="20">Crotty S</author>
                    <author ORCID="0000-0001-7153-3769" order="21">Ward AB</author>
                    <title>Priming antibody responses to the fusion peptide in rhesus macaques.</title>
                    <journal_abbreviation>Npj Vaccines</journal_abbreviation>
                    <country>UK</country>
                    <volume>9</volume>
                    <first_page>126</first_page>
                    <last_page>126</last_page>
                    <year>2024</year>
                    <external_references type="PUBMED">38997302</external_references>
                    <external_references type="DOI">doi:10.1038/s41541-024-00918-9</external_references>
                    <external_references type="ISSN">2059-0105</external_references>
                </journal_citation>
            </primary_citation>
            <secondary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0002-3364-3083" order="22">Cottrell CA</author>
                    <author ORCID="0000-0002-7170-6866" order="23">Pratap PP</author>
                    <author ORCID="0000-0003-4583-1118" order="24">Cirelli KM</author>
                    <author order="25">Carnathan DG</author>
                    <author order="26">Enemuo CA</author>
                    <author ORCID="0000-0001-9452-8954" order="27">Antanasijevic A</author>
                    <author ORCID="0000-0002-9695-8138" order="28">Ozorowski G</author>
                    <author ORCID="0000-0002-2020-2991" order="29">Sewall LM</author>
                    <author ORCID="0000-0002-2468-8589" order="30">Gao H</author>
                    <author ORCID="0009-0008-6919-9288" order="31">Greene KM</author>
                    <author ORCID="0000-0003-2547-968X" order="32">Allen JD</author>
                    <author ORCID="0000-0003-2254-2380" order="33">Ngo JT</author>
                    <author order="34">Choe Y</author>
                    <author ORCID="0000-0001-8977-7470" order="35">Nogal B</author>
                    <author ORCID="0000-0003-4668-6290" order="36">Silva M</author>
                    <author ORCID="0000-0001-6354-4003" order="37">Bhiman J</author>
                    <author ORCID="0000-0001-9212-4307" order="38">Pauthner M</author>
                    <author ORCID="0000-0002-8637-1405" order="39">Irvine DJ</author>
                    <author ORCID="0000-0003-0856-6319" order="40">Montefiori D</author>
                    <author ORCID="0000-0002-1072-2694" order="41">Crispin M</author>
                    <author ORCID="0000-0001-6711-9864" order="42">Burton DR</author>
                    <author ORCID="0000-0001-6602-2470" order="43">Silvestri G</author>
                    <author ORCID="0000-0002-6484-6262" order="44">Crotty S</author>
                    <author ORCID="0000-0001-7153-3769" order="45">Ward AB</author>
                    <title>Focusing antibody responses to the fusion peptide in rhesus macaques.</title>
                    <journal_abbreviation>Biorxiv</journal_abbreviation>
                    <country>US</country>
                    <year>2023</year>
                    <external_references type="PUBMED">37425865</external_references>
                    <external_references type="DOI">doi:10.1101/2023.06.26.545779</external_references>
                    <external_references type="ISSN">2692-8205</external_references>
                </journal_citation>
            </secondary_citation>
        </citation_list>
    </crossreferences>
    <sample>
        <name>nsEM map of macaque 32647 week 18 polyclonal Fab in complex with BG505 v5.2 Boost #2 immunogen</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>nsEM map of macaque 32647 week 18 polyclonal Fab in complex with BG505 v5.2 Boost #2 immunogen</name>
                <parent>0</parent>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="2">
                <name>Polyclonal Fabs</name>
                <parent>1</parent>
                <natural_source database="NCBI">
                    <organism ncbi="9544">Macaca mulatta</organism>
                </natural_source>
            </complex_supramolecule>
            <complex_supramolecule supramolecule_id="3">
                <name>BG505 SOSIP v5.2 Boost #2 immunogen</name>
                <parent>1</parent>
                <natural_source database="NCBI">
                    <organism ncbi="11676">Human immunodeficiency virus 1</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.02</concentration>
                    <buffer>
                        <ph>7.4</ph>
                        <component>
                            <concentration units="mM">150.0</concentration>
                            <formula>NaCl</formula>
                            <name>sodium chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">50.0</concentration>
                            <formula>C4H11NO3</formula>
                            <name>tris hyrdochloride</name>
                        </component>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>Uranyl Formate</material>
                    </staining>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>TFS TALOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <c2_aperture_diameter units="µm">70.0</c2_aperture_diameter>
                    <nominal_defocus_min units="µm">1.5</nominal_defocus_min>
                    <nominal_defocus_max units="µm">2.0</nominal_defocus_max>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI CETA (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">25.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <startup_model type_of_model="PDB ENTRY">
                    <pdb_model>
                        <pdb_id>4ZMJ</pdb_id>
                    </pdb_model>
                </startup_model>
                <final_reconstruction>
                    <resolution units="Å" res_type="BY AUTHOR">20.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                        </software>
                    </software_list>
                    <number_images_used>4059</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </final_angle_assignment>
                <final_three_d_classification>
                    <number_classes>5</number_classes>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3.0</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="28312">
        <file>emd_45145.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>192</col>
            <row>192</row>
            <sec>192</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>192</x>
            <y>192</y>
            <z>192</z>
        </spacing>
        <cell>
            <a units="Å">380.16</a>
            <b units="Å">380.16</b>
            <c units="Å">380.16</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.044979684</minimum>
            <maximum>0.09541125</maximum>
            <average>-0.00015951518</average>
            <std>0.004993155</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.98</x>
            <y units="Å">1.98</y>
            <z units="Å">1.98</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0196</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-45145::::</label>
        <annotation_details>3d refined map</annotation_details>
    </map>
    <interpretation>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="28312">
                <file>emd_45145_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>192</col>
                    <row>192</row>
                    <sec>192</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>192</x>
                    <y>192</y>
                    <z>192</z>
                </spacing>
                <cell>
                    <a units="Å">380.16</a>
                    <b units="Å">380.16</b>
                    <c units="Å">380.16</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.052344</minimum>
                    <maximum>0.1029169</maximum>
                    <average>-0.0001413351</average>
                    <std>0.005624147</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.98</x>
                    <y units="Å">1.98</y>
                    <z units="Å">1.98</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-45145::::</label>
                <annotation_details>half map 2</annotation_details>
            </half_map>
            <half_map format="CCP4" size_kbytes="28312">
                <file>emd_45145_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>192</col>
                    <row>192</row>
                    <sec>192</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>192</x>
                    <y>192</y>
                    <z>192</z>
                </spacing>
                <cell>
                    <a units="Å">380.16</a>
                    <b units="Å">380.16</b>
                    <c units="Å">380.16</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.051437702</minimum>
                    <maximum>0.098518</maximum>
                    <average>-0.00012979702</average>
                    <std>0.005667403</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.98</x>
                    <y units="Å">1.98</y>
                    <z units="Å">1.98</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-45145::::</label>
                <annotation_details>half map 1</annotation_details>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
