<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_2_0/emdb.xsd" emdb_id="EMD-4488" version="3.0.2.0">
    <admin>
        <current_status>
            <date>2020-11-25</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2018-12-19</deposition>
            <header_release>2019-10-02</header_release>
            <map_release>2019-10-02</map_release>
            <update>2020-11-25</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>Biotechnology and Biological Sciences Research Council</funding_body>
                <code>BB/P026397</code>
                <country>United Kingdom</country>
            </grant_reference>
        </grant_support>
        <title>Structure of the actin core of porcine thin filaments deposited by spraying</title>
        <authors_list>
            <author>Kontziampasis D</author>
            <author>Klebl DP</author>
            <author>Iadanza MG</author>
            <author>Scarff CA</author>
            <author>Kopf F</author>
            <author>Sobott F</author>
            <author>Monteiro DCF</author>
            <author>Trebbin M</author>
            <author>Muench SP</author>
            <author>White HD</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Kontziampasis D</author>
                    <author order="2">Klebl DP</author>
                    <author order="3">Iadanza MG</author>
                    <author order="4">Scarff CA</author>
                    <author order="5">Kopf F</author>
                    <author order="6">Sobott F</author>
                    <author order="7">Monteiro DCF</author>
                    <author order="8">Trebbin M</author>
                    <author order="9">Muench SP</author>
                    <author order="10">White HD</author>
                    <title>A cryo-EM grid preparation device for time-resolved structural studies.</title>
                    <journal_abbreviation>Iucrj</journal_abbreviation>
                    <country>UK</country>
                    <volume>6</volume>
                    <first_page>1024</first_page>
                    <last_page>1031</last_page>
                    <year>2019</year>
                    <external_references type="PUBMED">31709058</external_references>
                    <external_references type="DOI">doi:10.1107/S2052252519011345</external_references>
                    <external_references type="ISSN">2052-2525</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-4488</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>actin core of porcine thin filaments</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>actin core of porcine thin filaments</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="9823">Sus scrofa</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <concentration units="mg/mL">0.2</concentration>
                    <buffer>
                        <ph>7</ph>
                        <component>
                            <concentration units="mM">50.0</concentration>
                            <formula>CH3CO2K</formula>
                            <name>potassium acetate</name>
                        </component>
                        <component>
                            <concentration units="mM">10.0</concentration>
                            <formula>C7H15NO4S</formula>
                            <name>mops</name>
                        </component>
                        <component>
                            <concentration units="mM">3.0</concentration>
                            <formula>MgCl2</formula>
                            <name>magnesium chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">1.0</concentration>
                            <formula>C14H24N2O10</formula>
                            <name>EGTA</name>
                        </component>
                    </buffer>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">90</chamber_humidity>
                        <chamber_temperature units="K">293</chamber_temperature>
                        <instrument>HOMEMADE PLUNGER</instrument>
                        <details></details>
                    </vitrification>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON III (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/Å^2">65.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="Å">27.65</delta_z>
                            <delta_phi units="deg">-166.33</delta_phi>
                            <axial_symmetry>C1</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">5.6</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>3</version>
                        </software>
                    </software_list>
                    <number_images_used>93468</number_images_used>
                </final_reconstruction>
                <startup_model type_of_model="PDB ENTRY">
                    <pdb_model>
                        <pdb_id>5MVY</pdb_id>
                    </pdb_model>
                    <details>60 A lowpass filtered</details>
                </startup_model>
                <final_angle_assignment>
                    <type>MAXIMUM LIKELIHOOD</type>
                </final_angle_assignment>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="108001">
        <file>emd_4488.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>300</col>
            <row>300</row>
            <sec>300</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>300</x>
            <y>300</y>
            <z>300</z>
        </spacing>
        <cell>
            <a units="Å">319.50003</a>
            <b units="Å">319.50003</b>
            <c units="Å">319.50003</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.03585858</minimum>
            <maximum>0.15730713</maximum>
            <average>0.00088263385</average>
            <std>0.008308285</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.065</x>
            <y units="Å">1.065</y>
            <z units="Å">1.065</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.05</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-4488::::</label>
        <annotation_details>LocalRes filtered map with symmetry</annotation_details>
    </map>
    <interpretation>
        <additional_map_list>
            <additional_map format="CCP4" size_kbytes="108001">
                <file>emd_4488_additional_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>300</col>
                    <row>300</row>
                    <sec>300</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>300</x>
                    <y>300</y>
                    <z>300</z>
                </spacing>
                <cell>
                    <a units="Å">319.50003</a>
                    <b units="Å">319.50003</b>
                    <c units="Å">319.50003</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.023325756</minimum>
                    <maximum>0.084910035</maximum>
                    <average>0.00039856083</average>
                    <std>0.0037605283</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.065</x>
                    <y units="Å">1.065</y>
                    <z units="Å">1.065</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-4488::::</label>
                <annotation_details>Sharpened map</annotation_details>
            </additional_map>
            <additional_map format="CCP4" size_kbytes="108001">
                <file>emd_4488_additional_3.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>300</col>
                    <row>300</row>
                    <sec>300</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>300</x>
                    <y>300</y>
                    <z>300</z>
                </spacing>
                <cell>
                    <a units="Å">319.50003</a>
                    <b units="Å">319.50003</b>
                    <c units="Å">319.50003</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.0067233937</minimum>
                    <maximum>0.057166032</maximum>
                    <average>-0.0000268051</average>
                    <std>0.0037843317</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.065</x>
                    <y units="Å">1.065</y>
                    <z units="Å">1.065</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-4488::::</label>
                <annotation_details>Unsharpened map</annotation_details>
            </additional_map>
            <additional_map format="CCP4" size_kbytes="108001">
                <file>emd_4488_additional_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>300</col>
                    <row>300</row>
                    <sec>300</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>300</x>
                    <y>300</y>
                    <z>300</z>
                </spacing>
                <cell>
                    <a units="Å">319.50003</a>
                    <b units="Å">319.50003</b>
                    <c units="Å">319.50003</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.05045296</minimum>
                    <maximum>0.18101974</maximum>
                    <average>0.00019206067</average>
                    <std>0.0085829785</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.065</x>
                    <y units="Å">1.065</y>
                    <z units="Å">1.065</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-4488::::</label>
                <annotation_details>LocalRes filtered map</annotation_details>
            </additional_map>
        </additional_map_list>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="108001">
                <file>emd_4488_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>300</col>
                    <row>300</row>
                    <sec>300</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>300</x>
                    <y>300</y>
                    <z>300</z>
                </spacing>
                <cell>
                    <a units="Å">319.50003</a>
                    <b units="Å">319.50003</b>
                    <c units="Å">319.50003</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.017103335</minimum>
                    <maximum>0.06323419</maximum>
                    <average>-0.0000250961</average>
                    <std>0.0040434287</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.065</x>
                    <y units="Å">1.065</y>
                    <z units="Å">1.065</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-4488::::</label>
                <annotation_details>halfmap 2</annotation_details>
            </half_map>
            <half_map format="CCP4" size_kbytes="108001">
                <file>emd_4488_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>300</col>
                    <row>300</row>
                    <sec>300</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>300</x>
                    <y>300</y>
                    <z>300</z>
                </spacing>
                <cell>
                    <a units="Å">319.50003</a>
                    <b units="Å">319.50003</b>
                    <c units="Å">319.50003</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.020323526</minimum>
                    <maximum>0.061573457</maximum>
                    <average>-0.0000168311</average>
                    <std>0.004057689</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.065</x>
                    <y units="Å">1.065</y>
                    <z units="Å">1.065</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-4488::::</label>
                <annotation_details>halfmap 1</annotation_details>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
