2025-05-28 REL RCSB RCSB RCSB 2024-05-10 2025-01-22 2025-01-22 2025-05-28 Canadian Institutes of Health Research (CIHR) Canada Cryo-EM map of the human autophagy tethering factor EPG5 Cheung YWS Nam SE Yip CK Tether, autophagy, CYTOSOLIC PROTEIN Cheung YWS Nam SE Fairlie GMJ Scheu K Bui JM Shariati HR Gsponer J Yip CK Structure of the human autophagy factor EPG5 and the molecular basis of its conserved mode of interaction with Atg8-family proteins. Autophagy US 21 1173 1191 2025 39809444 doi:10.1080/15548627.2024.2447213 1554-8635 Ectopic P granules protein 5 homolog Ectopic P granules protein 5 homolog 0 1 Homo sapiens 0.298 Ectopic P granules protein 5 homolog Homo sapiens Spodoptera frugiperda LEVO MSYYHHHHHHDYDIPTTENL YFQGAMGSDYKDDDDKGSGI QRPTSTMAEAVKPQRRAKAK ASRTKTKEKKKYETPQREES SEVSLPKTSREQEIPSLACE FKGDHLKVVTDSQLQDDASG QNESEMFDVPLTSLTISNEE SLTCNTEPPKEGGEARPCVG DSAVTPKVHPGDNVGTKVET PKNFTEVEENMSVQGGLSES APQSNFSYTQPAMENIQVRE TQNSKEDKQGLVCSSEVPQN VGLQSSCPAKHGFQTPRVKK LYPQLPAEIAGEAPALVAVK PLLRSERLYPELPSQLELVP FTKEQLKILEPGSWLENVES YLEEFDSMAHQDRHEFYELL LNYSRCRKQLLLAEAELLTL TSDCQNAKSRLWQFKEEQMS VQGICADQVKVFSYHRYQRV EMNENALVELKKLFDAKSEH LHQTLALHSYTSVLSRLQVE SYIYALLSSSAVLRSSAIHQ QGRASKQTESIPSDLCQLKE CISVLFMFTRRVNEDTQFHD DILLWLQKLVSVLQRVGCPG DHLFLLNHILRCPAGVSKWA VPFIQIKVLHNPSGVFHFMQ SLALLMSPVKNRAEFMCHMK PSERKPSSSGPGSGTWTLVD EGGEEDEDPETSWILLNEDD LVTILAQFPFHELFQHLLGF KAKGDYLPETTRPQEMMKIF AFANSLVELLAVGLETFNRA RYRQFVKRIGYMIRMTLGYV SDHWAQYVSHNQGSGLAQQP YSMEKLQVEFDELFLRAVLH VLKAKRLGIWLFMSEMPFGT LSVQMLWKLFYLMHQVESEN LQQLSSSLQPAQCKQQLQDP EHFTNFEKCLSSMNSSEEIC LLTTFAQMAQARRTNVDEDF IKIIVLEIYEVSYVTLSTRE TFSKVGRELLGTITAVHPEI ISVLLDRVQETIDQVGMVSL YLFKELPLYLWQPSASEIAV IRDWLLNYNLTVVKNKLACV ILEGLNWGFAKQATLHLDQA VHAEVALMVLEAYQKYLAQK PYAGILSESMKQVSYLASIV RYGETPETSFNQWAWNLILR LKLHKNDYGIQPNCPAVPFS VTVPDMTESPTFHPLLKAVK AGMPIGCYLALSMTAVGHSI EKFCAEGIPLLGILVQSRHL RTVVHVLDKILPLFYPCQYY LLKNEQFLSHLLLFLHLDSG VPQGVTQQVTHKVAQHLTGA SHGDNVKLLNSMIQAHISVS TQPNEVGPVAVLEFWVQALI SQHLWYREQPILFLMDHLCK AAFQLMQEDCIQKLLYQQHK NALGYHCDRSLLSSLVSWIV AGNITPSFVEGLATPTQVWF AWTVLNMESIFEEDSQLRRV IEGELVINSAFTPDQALKKA QTQLKLPIVPSLQRLLIYRW AHQALVTPSDHPLLPLIWQK FFLLYLHRPGPQYGLPIDGC IGRRFFQSPAHINLLKEMKR RLTEVADFHHAASKALRVPA EGSEGLPESHSGTPGYLTSP ELHKELVRLFNVYILWLEDE NFQKGDTYIPSLPKHYDIHR LAKVMQNQQDLWMEYLNMER IYHEFQETVGLWTQAKLESH STPCSLSVQLDFTDPLLAKE RVLSNLRKHEAPQPPLALHP TKPPVPVISSAVLLSQKDAT QLVCTDLNLLQQQARTAALR ESQQVALDGELLDTMPKQYV NREEQTTLHLECRGSSGKKC QGAAVVTVQFEGMHKNEAIS QQLHVLRKEVKQLQAEAAKP PSLNIVEAAVHAENLITALV NAYKLQPTPGIQKVGISLFF TIVDYVSDETQRHPPTRQFF TSCIEILGQVFISGIKSECR KVLETILKNSRLCSLLSPFF TPNAAPAEFIQLYEQVVKFL SEDNSDMIFMLLTKFDLKQW LSATKPPLSDRTRLLESIHL ALTAWGLEPDEDILMPFNLF CKHWTYLLLYQFPDQYSDIL RLLMQSSAEQLLSPECWKAT LRALGCCAPSCQQGAASTEG AVLPSSSDALLSDKQVMETI QWLSDFFYKLRLSKMDFKSF GLFSKWSPYMADVKTFLGYL VKRLIDLEMTCLAQDPTASR KTVLKSLHSVIIQLFKPWIL VLEDNESSQQRHYPWLESDT VVASSIVQLFTDCIDSLHES FKDKLLPGDAGALWLHLMHY CEACTAPKMPEFILYAFHST YRKLPWKDLHPDQMLMEAFF KVERGSPKSCFLFLGSVLCE VNWVSVLSDAWNSSPHPETR SMIVCLLFMMILLAKEVQLV DQTDSPLLSLLGQTSSLSWH LVDIVSYQSVLSYFSSHYPP SIILAKESYAELIMKLLKVS AGLSIPTDSQKHLDAVPKCQ AFTHQMVQFLSTLEQNGKIT LAVLEQEMSKLLDDIIVFNP PDMDSQTRHMALSSLFMEVL MMMNNATIPTAEFLRGSIRT WIGQKMHGLVVLPLLTAACQ SLASVRHMAETTEACITAYF KESPLNQNSGWGPILVSLQV PELTMEEFLQECLTLGSYLT LYVYLLQCLNSEQTLRNEMK VLLILSKWLEQVYPSSVEEE AKLFLWWHQVLQLSLIQTEQ NDSVLTESVIRILLLVQSRQ NLVAEERLSSGILGAIGFGR KSPLSNRFRVVARSMAAFLS VQVPMEDQIRLRPGSELHLT PKAQQALNALESMASSKQYV EYQDQILQATQFIRHPGHCL QDGKSFLALLVNCLYPEVHY LDHIR Q9HCE0 singleParticle particle 7.4 50.0 C4H11NO3 Tris 150.0 NaCl Sodium chloride 0.01 C32H58N2O7S CHAPS 0.5 C9H15O6P TCEP ETHANE 100 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.5 3.5 105000.0 FEI FALCON IV (4k x 4k) 50.0 1 875590 cryoSPARC 3.3.2 PHASE FLIPPING AND AMPLITUDE CORRECTION
cryoSPARC ab initio reconstruction
 1 C1 7.85 FSC 0.143 CUT-OFF cryoSPARC 3.3.2 103967 MAXIMUM LIKELIHOOD cryoSPARC 3.3.2 MAXIMUM LIKELIHOOD cryoSPARC 3.3.2 1 cryoSPARC 3.3.2 emd_44835.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 480.00003 480.00003 480.00003 90.0 90.0 90.0 X Y Z -1.3300612 2.2750866 0.000016479371 0.047907818 2.4 2.4 2.4 0.2 AUTHOR emd_44835_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 480.00003 480.00003 480.00003 90.0 90.0 90.0 X Y Z -0.2757008 1.0047688 0.000016479347 0.023599628 2.4 2.4 2.4 AUTHOR emd_44835_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 480.00003 480.00003 480.00003 90.0 90.0 90.0 X Y Z -0.50064945 1.2181277 0.00019937438 0.06273631 2.4 2.4 2.4 AUTHOR emd_44835_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 480.00003 480.00003 480.00003 90.0 90.0 90.0 X Y Z -0.5036676 1.2770579 0.00021118703 0.06288393 2.4 2.4 2.4 AUTHOR