2024-10-23 REL RCSB RCSB RCSB 2024-03-31 2024-06-26 2024-06-26 2024-10-23 Canadian Institutes of Health Research (CIHR) PJT166152 Canada Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo Coupland CE Rubinstein JL Membrane, Synaptic, Complex, PROTON TRANSPORT Coupland CE Karimi R Bueler SA Liang Y Courbon GM Di Trani JM Wong CJ Saghian R Youn JY Wang LY Rubinstein JL High-resolution electron cryomicroscopy of V-ATPase in native synaptic vesicles. Science US 385 168 174 2024 38900912 doi:10.1126/science.adp5577 1095-9203 0038 SCIEAS EMD-44351 other EM volume
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, V1
 EMD-44352 other EM volume
Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, peripheral stalks
 EMD-44353 other EM volume EMD-44354 other EM volume EMD-44355 other EM volume 9b8o FULLOVERLAP Synaptic vesicle V-ATPase with synaptophysin and SidK, state 3, Vo Synaptic vesicle V-ATPase with synaptophysin and SidK, state 3, Vo 0 1 11 3 5 6 9 10 Rattus norvegicus Sprague Dawley Brain Synaptic Vesicle Synaptic Vesicle Membrane ATPase H+-transporting V1 subunit D Rattus norvegicus 0.02835902 1 LEVO MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRFRQILKKIIETKMLMGEVMREAAFSLAEAKFTAGDFS TTVIQNVNKAQVKIRAKKDNVAGVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDE AIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKIIKEKSEKDLERRRAAGEVMEPANLLAEEK DEDLLFE Q6P503 V-type proton ATPase subunit S1 Rattus norvegicus 0.051160358999999996 1 LEVO MMAATVVSRIRTGTRWAPVLWLLLSLVAVAAAVAAEQQVPLVLWSSDRDLWAPVADTHEGHITSDMQLSTYLDPALELGP RNVLLFLQDKLSIEDFTAYGGVFGNKQDSAFSNLENALDLAPSSLVLPAVDWYAISTLTTYLQEKLGASPLHVDLATLKE LKLNASLPALLLIRLPYTASSGLMAPREVLTGNDEVIGQVLSTLESEDVPYTAALTAVRPSRVARDVAMVAGGLGRQLLQ TQVASPAIHPPVSYNDTAPRILFWAQNFSVAYKDEWKDLTSLTFGVENLNLTGSFWNDSFAMLSLTYEPLFGATVTFKFI LASRFYPVSARYWFTMERLEIHSNGSVAHFNVSQVTGPSIYSFHCEYVSSLSKKGSLLVTNVPSLWQMTLHNFQIQAFNV TGEQFSYASDCAGFFSPGIWMGLLTTLFMLFIFTYGLHMILSLKTMDRFDDRKGPTITLTQIV O54715 Synaptophysin Rattus norvegicus 0.033331523 1 LEVO MDVVNQLVAGGQFRVVKEPLGFVKVLQWVFAIFAFATCGSYTGELRLSVECANKTESALNIEVEFEYPFRLHQVYFDAPS CVKGGTTKIFLVGDYSSSAEFFVTVAVFAFLYSMGALATYIFLQNKYRENNKGPMMDFLATAVFAFMWLVSSSAWAKGLS DVKMATDPENIIKEMPMCRQTGNTCKELRDPVTSGLNTSVVFGFLNLVLWVGNLWFVFKETGWAAPFMRAPPGAPEKQPA PGDAYGDAGYGQGPGGYGPQDSYGPQGGYQPDYGQPASGGGGYGPQGDYGQQGYGQQGAPTSFSNQM P07825 V-type proton ATPase 116 kDa subunit a 1 Rattus norvegicus 0.094950836 1 LEVO MGELFRSEEMTLAQLFLQSEAAYCCVSELEELGKVQFRDLNPDVNVFQRKFVNEVRRCEEMDRKLRFVEKEIRKANIPIM DTGENPEVPFPRDMIDLEANFEKIENELKEINTNQEALKRNFLELTELKFILRKTQQFFDEMADPDLLEESSSLLEPNEM GRGAPLRLGFVAGVINRERIPTFERMLWRVCRGNVFLRQAEIENPLEDPVTGDYVHKSVFIIFFQGDQLKNRVKKICEGF RASLYPCPETPQERKEMASGVNTRIDDLQMVLNQTEDHRQRVLQAAAKNIRVWFIKVRKMKAIYHTLNLCNIDVTQKCLI AEVWCPVTDLDSIQFALRRGTEHSGSTVPSILNRMQTNQTPPTYNKTNKFTHGFQNIVDAYGIGTYREINPAPYTVITFP FLFAVMFGDFGHGILMTLFAVWMVLRESRILSQKNENEMFSMVFSGRYIILLMGLFSIYTGLIYNDCFSKSLNIFGSSWS VRPMFTIGNWTEETLLGSSVLQLNPAIPGVFGGPYPFGIDPIWNIATNKLTFLNSFKMKMSVILGIIHMLFGVSLSLFNH IYFKKPLNIYFGFIPEIIFMSSLFGYLVILIFYKWTAYDAHSSRNAPSLLIHFINMFLFSYPESGNAMLYSGQKGIQCFL IVVAMLCVPWMLLFKPLILRHQYLRKKHLGTLNFGGIRVGNGPTEEDAEIIQHDQLSTHSEDAEEPTEDEVFDFGDTMVH QAIHTIEYCLGCISNTASYLRLWALSLAHAQLSEVLWTMVIHIGLHVRSLAGGLGLFFIFAAFATLTVAILLIMEGLSAF LHALRLHWVEFQNKFYTGTGFKFLPF P25286 ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a Rattus norvegicus 0.021618553 1 LEVO MTGLELLYLGIFVAFWACMIVVGICYTIFDLGFRFDVAWFLTETSPFMWSNLGIGLAISLSVVGAAWGIYITGSSIIGGG VKAPRIKTKNLVSIIFCEAVAIYGIIMAIVISNMAEPFSATDPKAIGHRNYHAGYSMFGAGLTVGLSNLFCGVCVGIVGS GAALADAQNPSLFVKILIVEIFGSAIGLFGVIVAILQTSRVKMGD B0K022 V-type proton ATPase subunit Rattus norvegicus 0.040341933999999996 1 LEVO MSFFPELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPLTVSVIDDKLKEKMVV EFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAELVPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPL AAFFQDCISEQDLDEMNIEIIRNTLYKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKL FPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVKLNKLAFLNQFHFGVFYAFVK LKEQECRNIVWIAECIAQRHRAKIDNYIPIF Q5M7T6 V-type proton ATPase subunit e 2 Rattus norvegicus 0.00920302 1 LEVO MTAHSFALPVIIFTTFWGLIGIAGPWFVPKGPNRGVIITMLVATAVCCYLFWLIAILAQLNPLFGPQLKNETIWYVRFLW E Q5EB76 Rnasek protein Rattus norvegicus 0.009502132 1 LEVO LCCGPKLAACGIVLSAWGVIMLIMLGIFFNVHSAVLIEDVPFTEKDFENGPQNIYNLYEQVSYNCFIAAGLYLLLGGFSF CQVRLN A0A8J8YMT9 V-type proton ATPase 16 kDa proteolipid subunit c Rattus norvegicus 0.015815833 9 LEVO MADIKNNPEYSSFFGVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIANSL TDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK P63081 Renin receptor Rattus norvegicus 0.039118578 1 LEVO MAVLVVLLSSLVSSALANEFSILRSPGSVVFRNGNWPIPGDRIPDVAALSMGFSVKEDLSWPGLAVGNLFHRPRATIMVT VKGVDKLALPTGSVISYPLENAVPFSLDSVANSIHSLFSEETPVVLQLAPSEERVYMVGKANSVFEDLSVTLRQLRNRLF QENSVLNSLPLNSLSRNNEVDLLFLSELQVLHDISSLLSRHKHLAKDHSPDLYSLELAGLDELGKRYGEDSEQFRDASRI LVDALQKFADDMYSLYGGNAVVELVTVKSFDTSLVRKSRTILETKQENTQSPYNLAYKYNLEYSVVFNLVLWIMTGLALA VIITSYNIWNMDPGYDSIIYRMTNQKIRMD Q6AXS4 V-type proton ATPase subunit F Rattus norvegicus 0.013389262 1 LEVO MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTTINEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDA HQRSIPAVLEIPSKEHPYDAAKDSILRRAKGMFTAEDLR P50408 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 0.0007901449999999999 5 PC1 methyl (3R,6Z,10E,14E)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate 0.0005346029999999999 1 WJP 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 1 NAG (7R)-4,7-DIHYDROXY-N,N,N-TRIMETHYL-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOSAN-1-AMINIUM 4-OXIDE 0.000524691 1 LP3 PHOSPHATIDYLETHANOLAMINE 0.0007340389999999999 9 PTY CHOLESTEROL 0.000386654 30 CLR singleParticle particle 7.4 Homemade GRAPHENE OXIDE GRAPHENE OXIDE CONTINUOUS GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK IV TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 1.9000000000000001 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN TFS FALCON 4i (4k x 4k) 37.5 1 3.2 FSC 0.143 CUT-OFF 198533 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_44350.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 309.0 309.0 309.0 90.0 90.0 90.0 X Y Z -1.188712 1.723616 0.000970846 0.050110538 1.03 1.03 1.03 0.108 AUTHOR emd_44350_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 309.0 309.0 309.0 90.0 90.0 90.0 X Y Z -0.5618412 0.6589978 0.0006536633 0.06843001 1.03 1.03 1.03 AUTHOR emd_44350_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 309.0 309.0 309.0 90.0 90.0 90.0 X Y Z -0.6018729 0.65389013 0.0006496484 0.06827982 1.03 1.03 1.03 AUTHOR