Artemia franciscana ATP synthase state 2 (composite structure), pH 8.0

2025-08-13 REL RCSB INITIAL_RELEASE REPOSITORY DATABASE_REFERENCES citation em_admin _citation.journal_volume _citation.page_first _citation.page_last _em_admin.last_update RCSB RCSB 2024-03-19 2025-03-26 2025-03-26 2025-08-13 National Institutes of Health/National Institute on Aging (NIH/NIA) RF1AG072484 United States National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) R21NS137275 United States Artemia franciscana ATP synthase state 2 (composite structure), pH 8.0 Mnatsakanyan N Mello JFR ATP synthesis, Complex V, mitochondria, oxidative-phosphorylation, MEMBRANE PROTEIN Kumar A da Fonseca Rezende E Mello J Wu Y Morris D Mezghani I Smith E Rombauts S Bossier P Krahn J Sigworth FJ Mnatsakanyan N Cryo-EM structure of the brine shrimp mitochondrial ATP synthase suggests an inactivation mechanism for the ATP synthase leak channel. Cell Death Differ. UK 32 1518 1535 2025 40108410 doi:10.1038/s41418-025-01476-w 1350-9047 EMD-49579 consensus EM volume EMD-44172 focused EM volume EMD-44169 focused EM volume EMD-44170 focused EM volume 9b3j FULLOVERLAP EMDB EMD-44142 associated EM volume

EMDB EMD-49579 consensus EM volume EMDB EMD-44172 focused EM volume EMDB EMD-44169 focused EM volume EMDB EMD-44170 focused EM volume Mitochondrial ATP synthase Mitochondrial ATP synthase 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 Artemia franciscana ATP synthase subunit c Artemia franciscana 0.013250407999999998 8 LEVO MYTIARIATRAAVSQGSQAYLRPVSSAVLSQKVIVEAPVATQARSLQTSAVQRDIDSAAKFIGAGAATVGVAGSGAGIGS VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF ATP synthase subunit alpha Artemia franciscana 0.059706499999999996 3 LEVO MALSTARIVSTVARQLPRGVQKVAARTAPVATIAARKLHVSSANNAAEISAVLEEKILGAAPKENLEETGRVLSIGDGIA RVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGIVVFGNDKHIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKG PIGSKTRQRVGVKAPGIIPRVSVREPMQTGMKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDAIINQKRFNDAQDEKKKL YCVYVAIGQKRSTVAQIVKRLTDTDAMRYTIVVSATASDAAPLQYLAPYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYR QMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMSESNGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYK GIRPAINVGLSVSRVGSAAQTRAMKQVAGSMKLELAQYREVAAFAQFGSDLDASTQQLLSRGVRLTELLKQGQYVPMAIE DQVAIIYCGVRGHLDKVEPSKITKFEKEFSQHIKTSHRDILDTIAKEGQISPDTDAKLKKVVTDFLSTFQA ATP synthase subunit beta Artemia franciscana 0.05588476999999999 3 LEVO MLGAVGRASLKVLTASKPSIELTKAVPAALSSRSVHAGQVDSAAAAAKAQAAANTSNGQITAVIGAVVDVQFEDQLPPIL NALEVQGRSPRLILEVAQHLGENTVRTIAMDGTEGLVRGQNVLDTGAPIKIPVGPETLGRIMNVIGEPIDERGPIVTDKF AAIHADAPEFVEMSVQQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREG NDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLG RIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDS TSRILDPNIIGEEHYNIARGVQKILQDYKSLQDIIAILGMDELSEEDKLIVSRARKIQRFLSQPFQVAEVFTGHAGKLVP IKDTIKGFKMILNGELDHLPEVAFYMVGPIEEVVAKAEKIAESQ ATP synthase subunit gamma Artemia franciscana 0.031976818 1 LEVO MFGRTSVLVLSQCNAAEQVRGMATLKAVSIRLKSVKNIQKITQSMKMVSAAKYTKAERELRVAKPYGQGAMKFYEKTELK GKEEKPSQLIIAISSDRGLCGAVHSSVGRQLKADLAANPDTMVICVGDKIRNILQRLYGNNLAMVCNDFGRRPPVFEDAT KVARAVLESGMEFTNGKIVYNAFRSVVSFRTTDIPVFSKNAIESADSIAAYDSLDSDVIQSYVEYSLASLIYYTMKENAT SEQSSRMTAMDNASKNAGEMIDKLTMTFNRTRQAVITRELIEIISGASAL ATP synthase subunit delta Artemia franciscana 0.017565455 1 LEVO MVSLTGDVSTVVGPTEVDSAEVGFADVSSAWDNQMAFTFAAPSQVFYNNANIRQVDVPSFSGSFGILPAHVATLAVLKPG VVTVYQEDGSTKKYFVSSGTVTVNDDSSVQVLAEEAVPVENLDLQAARDILSKAQSDVTSAGADMLKLAEGQIAVEVGEA LVKAAEGQL ATP synthase subunit epsilon Artemia franciscana 0.0074645959999999996 1 LEVO VRSNFASISGSGRRGRHVDFGASVDFEVHMMRRALKPELRNEAIKREESLLKVTPWKDGKPVKAAQ ATP synthase subunit b Artemia franciscana 0.029944415999999998 1 LEVO MLSRIAVQSARPIAALQSVRPVQTSSTKTSEVASASVAPVVQFKGPNEGVERDHVGFPRPLRPVNPGKVRVGFVPEEWFT FFYNKTGVTGPYVLGAGALTFLLSKEIYVVEHEFYTGVAIAIMGTYGVKKFGKQIADYADKGIGEIEQSFKEYQDSSKIG FEEAITLEERAQKSAEAQIMLFQAKRENVQFQLEAAYRARLHHVNNEIKKRLDYHLETERAQRQIKQKNMVDWIVRNVMK SITPEQERLMLSKCISDLKAMSIKA ATP synthase coupling factor 6, F6 Artemia franciscana 0.011140879000000001 1 LEVO MLAPRISVALRRSFSTSLPVVQKAVDPIQKLFLDKIKEYDQKSKAAGGKLLEASTEIQRELDAELDKLKKMYGGDTADLS KFPSFHFEDPVVDPINMQK ATP synthase subunit d Artemia franciscana 0.025422525 1 LEVO MASKRIARSSIDWAKMAESVPESQKAMYNQFKAKSDGYIRKALSYPEQPSPINWEHYRKSLTNPAMVDAFKKQYEALKVP YPEDKVSSQIDAQEAEAKKEITKFIQESRGRIENYKAELGKLGQMIPFEHMTLEDFFEAFPEKVLNPDPPSPNVKKKPFK NNSWHLIQKIPNHFGLILKKTLWNSKRRNSGNLEMNTIKSILLLDIIFKSFIGIKMCKL ATP synthase subunit a Artemia franciscana 0.024422471 1 LEVO MMASLFSVFDPTSSFLSNWLSMLIPLLFMVMSFWLIPSRPQFLAKSVLMGLNREMSLLMGPASFGANILVIALFLFILFN NFIGLFPYIFTATSHLAVTLSLAVPLWISFILYTWIKETTNALAHLVPLGTPAPLMPFMVLMEIISNMIRPITLSVRLAA NMIAGHLLLTLLGAQGTLENLYVTSIVVFSQIILLMLEFSVAIIQSYVFMTLMTLYASE Q37708 ATP synthase subunit OSCP Artemia franciscana 0.022563432 1 LEVO MNDVSQAARQFSTTSAATQLVKAPIQVFGIEGRYATALYSAAVKQKKLEAVEKDLVQLNASLKKFPRLGELLKNPTLSRQ LKKDAIGSMLKEQKAVDLTSNFLDLLTENNRLKMVDGVINAFKTIMAAHRGEVICEVTSAKPLDEAARKDLEVALKGFLK PGQNIKLTLKTDPAIIGGLVVSIGDRFVDMSIGTKIKRYTAALKTAV ATP synthase subunit 6.8PL Artemia franciscana 0.0037626289999999995 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) ATP synthase protein 8 Artemia franciscana 0.006351719 1 LEVO MPQMMPLPWIMVFLVSMALLWAIMTMVFFLYQPRSVSSAKGFSDRTVYLNWKW Q37707 ATP synthase subunit f Artemia franciscana 0.013697799999999998 1 LEVO MGFGDYPAEYNPKVHGPYDPARFYGKADVPLGQVKLGELSQWLGRRNKNPQAVAAAVSRGWWRWQHKYVLPRKGGIAPYI QLIVGCSIFFYAINYGKMVAHRQRKYHCRKTHSISHSNI ATP synthase subunit g Artemia franciscana 0.011236327999999999 1 LEVO MSALAKKIATSGPVVLKNTIAVTRPKLATFLKYAKVELTPPGPADVPKIQEGIQNLIHSAKTGKWKQVSVREAWLNTLIV TEIAMWFFVGECIGKGSVIGYRV ATP synthase subunit e Artemia franciscana 0.009557996999999999 1 LEVO MSFAPPVNVSPLIRAGRYGALVVGIVYGSYRFGSLQKRENEWRVEEARRKVIRDALNAENKAKATREEMLYLAKETGVKV PENF ADENOSINE-5'-TRIPHOSPHATE 0.000507181 4 ATP MAGNESIUM ION 2.4305e-05 4 MG CARDIOLIPIN 0.0014640429999999997 2 CDL singleParticle particle 0.5 8.0 ETHANE 100 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 1.7 81000.0 GATAN K3 BIOQUANTUM (6k x 4k) 15.8 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.73 FSC 0.143 CUT-OFF 302409 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_44142.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 546.816 546.816 546.816 90.0 90.0 90.0 Z Y X -62.934510000000003 80.275899999999993 -0.005026648 1.0204294 1.068 1.068 1.068 3.55 AUTHOR ::::EMDATABANK.org::::EMD-44142:::: Artemia franciscana ATP synthase state 2 (composite structure), pH 8.0 Other integrative model

Genome annotation and AlphaFold

emd_44142_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 546.816 546.816 546.816 90.0 90.0 90.0 X Y Z -2.9836476 4.896571 -0.0010809014 0.07910703 1.068 1.068 1.068 AUTHOR ::::EMDATABANK.org::::EMD-44142:::: Artemia franciscana ATP synthase state 2, pH 8.0 emd_44142_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 546.816 546.816 546.816 90.0 90.0 90.0 X Y Z -0.939242 2.2245803 -0.00015617408 0.060111225 1.068 1.068 1.068 AUTHOR ::::EMDATABANK.org::::EMD-44142:::: Artemia franciscana ATP synthase state 2, pH 8.0 emd_44142_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 546.816 546.816 546.816 90.0 90.0 90.0 X Y Z -0.8786404 2.202815 -0.00015441446 0.06007045 1.068 1.068 1.068 AUTHOR ::::EMDATABANK.org::::EMD-44142:::: Artemia franciscana ATP synthase state 2, pH 8.0