2024-12-11 REL RCSB RCSB RCSB 2024-03-19 2024-11-27 2024-11-27 2024-12-11 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35GM141461 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM069909 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) T32GM008203 United States Welch Foundation I-1532 United States Cancer Prevention and Research Institute of Texas (CPRIT) RP220582 United States Cryo-EM structure of yeast (Nap1)2-H2A-H2B-Kap114 Jiou J Fung HYJ Chook YM Histone, Chaperone, Import, Nucleosome Assembly, TRANSPORT PROTEIN Fung HYJ Jiou J Niesman AB Bernardes NE Chook YM Nap1 and Kap114 co-chaperone H2A-H2B and facilitate targeted histone release in the nucleus. J.Cell Biol. US 224 2025 39601790 doi:10.1083/jcb.202408193 1540-8140 2019 JCLBA3 EMD-44137 focused EM volume
Cryo-EM structure of yeast (Nap1)2-H2A-H2B-Kap114 Locally refined map
 EMD-44140 consensus EM volume
Cryo-EM structure of yeast (Nap1)2-H2A-H2B-Kap114 Consensus map
 9b3f FULLOVERLAP Crosslinked mixture of Kap114 with Nap1 and H2A-H2B Crosslinked mixture of Kap114 with Nap1 and H2A-H2B 0 1 2 3 4
Nap1 and H2A-H2B were pre-complexed with excess histones, and Kap114 was added before mild crosslinking and SEC separation.
Saccharomyces cerevisiae 0.072 NAP1 isoform 1 Saccharomyces cerevisiae 0.036182355 2 Escherichia coli LEVO MGSSHHHHHHSSGLVPRGSHMLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIW EQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLE YLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQ RNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELEEDLEERLALDYSIGEQLKDKLIPRAVDWFTGAAL A0A8H4BY55 KAP114 isoform 1 Saccharomyces cerevisiae 0.11422086699999999 1 Escherichia coli LEVO GGSMDINELIIGAQSADKHTREVAETQLLQWCDSDASQVFKALANVALQHEASLESRQFALLSLRKLITMYWSPGFESYR STSNVEIDVKDFIREVLLKLCLNDNENTKIKNGASYCIVQISAVDFPDQWPQLLTVIYDAISHQHSLNAMSLLNEIYDDV VSEEMFFEGGIGLATMEIVFKVLNTETSTLIAKIAALKLLKACLLQMSSHNEYDEASRKSFVSQCLATSLQILGQLLTLN FGNVDVISQLKFKSIIYENLVFIKNDFSRKHFSSELQKQFKIMAIQDLENVTHINANVETTESEPLLETVHDCSIYIVEF LTSVCTLQFSVEEMNKIITSLTILCQLSSETREIWTSDFNTFVSKETGLAASYNVRDQANEFFTSLPNPQLSLIFKVVSN DIEHSTCNYSTLESLLYLLQCILLNDDEITGENIDQSLQILIKTLENILVSQEIPELILARAILTIPRVLDKFIDALPDI KPLTSAFLAKSLNLALKSDKELIKSATLIAFTYYCYFAELDSVLGPEVCSETQEKVIRIINQVSSDAEEDTNGALMEVLS QVISYNPKEPHSRKEILQAEFHLVFTISSEDPANVQVVVQSQECLEKLLDNINMDNYKNYIELCLPSFINVLDSNNANNY RYSPLLSLVLEFITVFLKKKPNDGFLPDEINQYLFEPLAKVLAFSTEDETLQLATEAFSYLIFNTDTRAMEPRLMDIMKV LERLLSLEVSDSAAMNVGPLVVAIFTRFSKEIQPLIGRILEAVVVRLIKTQNISTEQNLLSVLCFLTCNDPKQTVDFLSS FQIDNTDALTLVMRKWIEAFEVIRGEKRIKENIVALSNLFFLNDKRLQKVVVNGNLIPYEGDLIITRSMAKKMPDRYVQV PLYTKIIKLFVSELSFQSKQPNPEQLITSDIKQEVVNANKDDDNDDWEDVDDVLDYDKLKEYIDDDVDEEADDDSDDITG LMDVKESVVQLLVRFFKEVASKDVSGFHCIYETLSDSERKVLSEALL A0A8H4BZV8 Histone H2A Saccharomyces cerevisiae 0.013881979999999999 1 Escherichia coli LEVO SGGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRII PRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKTAKASQEL A0A6A5Q402 Histone H2B Saccharomyces cerevisiae 0.014133145 1 Escherichia coli LEVO SSAAEKKPASKAPAEKKPAAKKTSTSVDGKKRSKVRKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEA SKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQA A0A6A5Q1U6 singleParticle particle 1.2 7.4 20.0 Tris 150.0 NaCl sodium chloride 2.0 TCEP 0.003125 Triton X-100 Quantifoil COPPER CARBON HOLEY ETHANE 95 280 FEI VITROBOT MARK IV
Crosslinked sample.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.9 2.4 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER 20 GATAN K3 (6k x 4k) 1 1080 5.4 59.0 1 4314112
Blob picking on 100 micrographs and then further template picking.
Ab-initio reconstruction.
 3.54 FSC 0.143 CUT-OFF cryoSPARC
Composite map was generated by first multiplying the consensus volume with the particle subtraction mask using vop multiply, and composited with the locally refined map covering the Nap1 and histone area by vop maximum in ChimeraX.
113011 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC cryoSPARC emd_44136.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 480 480 480 0 0 0 480 480 480 398.4 398.4 398.4 90.0 90.0 90.0 X Y Z -0.06855512 0.499007 0.0007003397 0.008213085 0.83 0.83 0.83 0.0688 AUTHOR Composite map of consensus and locally refined map of Nap1 and histone region. 8F1E PDB experimental model
For N-terminal region of Kap114 and H2A-H2B.
 9B23 PDB experimental model
For Nap1.
 AF-P53067-F1 A AlphaFold in silico model
For C-terminal region of Kap114
 OTHER