2024-12-11 REL RCSB RCSB RCSB 2024-03-15 2024-10-09 2024-10-09 2024-12-11 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35GM149291 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R01GM125831 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) F32GM133151 United States RuvBL core from SWR1-DNA complex (focused refinement) Louder RK Park G Wu C Chromatin Remodeler, Snf2 family ATPase, histone exchange, H2A.Z, GENE REGULATION Louder RK Park G Ye Z Cha JS Gardner AM Lei Q Ranjan A Hollmuller E Stengel F Pugh BF Wu C Molecular basis of global promoter sensing and nucleosome capture by the SWR1 chromatin remodeler. Cell 187 6849 6864.e18 2024 39357520 doi:10.1016/j.cell.2024.09.007 1097-4172 EMD-44074 other EM volume
Composite EM map of the same sample.
 Native SWR1 bound to DNA. Native SWR1 bound to DNA. 0
Endogenously purified yeast SWR1 complex bound to 147-bp dsDNA fragment in the presence of ATPgS.
Saccharomyces cerevisiae W303 1.19 Native SWR1 complex 1
Endogenously purified yeast SWR1 complex
Saccharomyces cerevisiae W303 singleParticle particle 0.125 7.6 20.0 HEPES 0.2 EDTA 2.0 MgCl2 magnesium chloride 100.0 NaCl sodium chloride 0.01 IGEPAL CA-630 0.25 TCEP 1.0 ATP-gamma-S 0.05 glutaraldehyde
20 mM HEPES pH 7.6, 0.2 mM EDTA, 2 mM MgCl2, 100 mM NaCl, 0.01% IGEPAL CA-630, 3.5% glycerol, and 0.25 mM TCEP, 1 mM ATP-gamma-s, 0.05% glutaraldehyde.
 Quantifoil R2/1 COPPER 400 GRAPHENE OXIDE CONTINUOUS PLASMA CLEANING AIR ETHANE 100 277 FEI VITROBOT MARK IV
6 second blot time and blot force of 12..
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 2.0 3.6 48543.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 1 5379 4.0 54.0
Each micrograph was fractionated into 64 frames within a 4 second exposure.
 1 386667
2D classification was used to remove graphene edges.
 EMD-4395 C1 3.3 FSC 0.143 CUT-OFF RELION 3.1.3 101246 MAXIMUM LIKELIHOOD RELION 3.1.3 MAXIMUM LIKELIHOOD RELION 3.1.3 RELION 3.1.3 emd_44107.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 395.52 395.52 395.52 90.0 90.0 90.0 X Y Z -0.06671022 0.120514795 0.000045050765 0.002032345 1.03 1.03 1.03 0.02 AUTHOR Focused refinement of RUVBL core from SWR1-DNA structure emd_44107_msk_1.map emd_44107_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 395.52 395.52 395.52 90.0 90.0 90.0 X Y Z -0.14601722 0.24476057 0.0000015995713 0.0041125454 1.03 1.03 1.03 AUTHOR Refined map filtered by local resolution (unmasked) emd_44107_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 395.52 395.52 395.52 90.0 90.0 90.0 X Y Z -0.031090671 0.058945823 0.0000062342438 0.0026454255 1.03 1.03 1.03 AUTHOR emd_44107_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 395.52 395.52 395.52 90.0 90.0 90.0 X Y Z -0.029195253 0.05775528 0.000004597422 0.002652541 1.03 1.03 1.03 AUTHOR