2024-12-11 REL RCSB RCSB RCSB 2024-02-28 2024-10-30 2024-10-30 2024-12-11 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35GM128786 United States National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) R01DK107733 United States National Science Foundation (NSF, United States) 2047640 United States Cancer Prevention and Research Institute of Texas (CPRIT) RP220582 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) U24GM129547 United States Local refined map of VPS35L(partial)-VPS29 Chen B Chen Z Han Y Boesch DJ Juneja P Burstein E Fung HYJ Retreiver, CCC, Endosomal recycling, Sorting Nexin, PROTEIN TRANSPORT Singla A Boesch DJ Fung HYJ Ngoka C Enriquez AS Song R Kramer DA Han Y Banarer E Lemoff A Juneja P Billadeau DD Bai X Chen Z Turer EE Burstein E Chen B Structural basis for Retriever-SNX17 assembly and endosomal sorting. Nat Commun UK 15 10193 10193 2024 39587083 doi:10.1038/s41467-024-54583-6 2041-1723 EMD-43870 focused EM volume
Local refined map for the VPS26C- and SNX17-bound half of VPS35L
 EMD-43872 other EM volume
Human Retriever VPS35L/VPS29/VPS26C complex bound to SNX17 peptide (Composite Map)
 EMD-43873 consensus EM volume
Consensus map
 Trimeric complex of VPS35/VPS29/VPS26 with excess SNX17 peptide Trimeric complex of VPS35/VPS29/VPS26 with excess SNX17 peptide 0 1 2 3 4 Homo sapiens singleParticle particle 7.0 Quantifoil R1.2/1.3 COPPER 300 GLOW DISCHARGE ETHANE FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.9 2.4 105000.0 10 GATAN K3 (6k x 4k) 64.0 1 1009886
Blob picking in cryoSPARC Live
 559719 particles after 2D classification, further classified into 3 classes obtained using ab initio reconstruction. 3.75 FSC 0.143 CUT-OFF cryoSPARC Non-uniform Refinement
Local refined map of the whole particle stack used to generate the consensus volume in the masked region containing VPS29-bound half of VPS35L.
227973 MAXIMUM LIKELIHOOD cryoSPARC MAXIMUM LIKELIHOOD cryoSPARC 3 cryoSPARC Heterogenous Refinement emd_43871.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 330.63998 330.63998 330.63998 90.0 90.0 90.0 X Y Z -0.22983217 0.5789375 0.00027146382 0.007616332 1.03325 1.03325 1.03325 0.087 AUTHOR Main map emd_43871_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 330.63998 330.63998 330.63998 90.0 90.0 90.0 X Y Z -0.36245227 0.69960153 0.00014620482 0.02313938 1.03325 1.03325 1.03325 AUTHOR Half map B emd_43871_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 330.63998 330.63998 330.63998 90.0 90.0 90.0 X Y Z -0.34160432 0.6931951 0.00014707273 0.023019763 1.03325 1.03325 1.03325 AUTHOR Half map A