2025-06-04 REL RCSB INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update DATA_COLLECTION em_admin em_software _em_admin.last_update RCSB RCSB 2024-02-09 2024-09-18 2024-09-18 2025-06-04 Other private Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs Sponholtz MR Byrne PO McLellan JS orthoherpesvirus, betaherpesvirus, cytomegalovirus, human betaherpesvirus 5, human cytomegalovirus, HCMV, glycoprotein B, gB, HCMV gB, VIRAL PROTEIN, 7H3, 1G2, VIRAL PROTEIN-IMMUNE SYSTEM complex Sponholtz MR Byrne PO Lee AG Ramamohan AR Goldsmith JA McCool RS Zhou L Johnson NV Hsieh CL Connors M Karthigeyan KP Crooks CM Fuller AS Campbell JD Permar SR Maynard JA Yu D Bottomley MJ McLellan JS Structure-based design of a soluble human cytomegalovirus glycoprotein B antigen stabilized in a prefusion-like conformation. Proc.Natl.Acad.Sci.USA US 121 e2404250121 e2404250121 2024 39231203 doi:10.1073/pnas.2404250121 1091-6490 0040 PNASA6 8vym FULLOVERLAP Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation in complex with 1G2 and 7H3 Fabs 0 1 2 3 4 5 Envelope glycoprotein B Human betaherpesvirus 5 0.08893143799999999 3 Homo sapiens LEVO MESRIWCLVVCVNLCIVCLGAAVSSSSTRGTSATHSHHSSHTTSAAHSRSGSVSQRVTSSQTVSHGVNETIYNTTLKYGD VVGVNTTKYPYRVCSMAQGTDLIRFERNIVCTSMKPINEDLDEGIMVVYKRNIVAHTFKVRVYQKVLTFRRSYAYIHTTY LLGSNTEYVAPPMWEIHHINSHSQCYSSYSRVIAGTVFVAYHRDSYENKTMQLMPDDYSNTHSTRYVTVKDQWHSRGSTW LYRETSNLNCMVTITTARSKYPYHFFATSTGDVVDISPFYNGTNRNASYFGENADKFFIFPNYTIVSDFGRPNSALETHR LVAFLERADSVISWDIQDEKNVTCQLTFWEASERTIRSEAEDSYHFSSAKMTATFLSKKQEVNMSDSALDCVRDEAINKL QQIFNTSYNQTYEKYGNVSVFETTGGLVVFWQGIKQKSLVELERLANRSSLNLTHNSTKSSTDGNNATHLSNMESVHNLV YAQLQFTYDTLRGYINRALAQIAEAWCVDQRRTLEVFKELSKINPSAILSAIYNKPIAARFMGDVLGLASCVTINQTSVK VLRDMNVKESPGRCYSRPVVIFNFANSSYVQYGQLGEDNEILLGNHRTEECQLPSLKIFIAGNSAYEYVDYLFKRMIDLS SISTVDSMIALDIDPLENTDFRVLELYSQKELRSSNVFDLEEIMREFNSYKQRVKYVEDKVVDPGSGYIPEAPRDGQAYV RKDGEWVLLSTFLGAAASLEVLFQGPGHHHHHHHHSAWSHPQFEKGGASGGGGSGGSAWSHPQFEK P13201 1G2 Fab Heavy Chain Homo sapiens 0.024206171999999998 3 Homo sapiens LEVO QLQLQESGPGLVKPSETLSLTCTVSGASIDRSTYYWGWIRQPPGKGLEWIANIYYNGRAVYSPSLKSRVTISVDTSKNQF SLKVRSLTAADTAVYYCATRWNYFFDFDYWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVS WNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD 1G2 Fab Light Chain Homo sapiens 0.022853125 3 Homo sapiens LEVO QSVLTQPPSASGTPGQRVTISCSGSSSNIETNYVSWYQQFPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR SEDEAEYYCGTWDDNSWVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAG VETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS 7H3 Fab Light Chain Homo sapiens 0.022879361 1 Homo sapiens LEVO QSVLSQPPSASGTPGQRVTISCSGSSSNIGKNYVYWYQQVPGTAPKLLMFKNNQRPSGVPDRFSGSKSGTSASLAISGLR SEDEADYYCSAWDGSLSRPLFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVK AGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS 7H3 Fab Heavy Chain Homo sapiens 0.025152064 1 Homo sapiens LEVO QVQLVQSGAEVKNPGASVKVSCKASGYTFTDYYIHWVRQAPGQGLEWMGWFNPNSGGTNFVQNFQGRVTMTRDTSISTAY MELSRLRSDDTAMYYCAKDSAKTASAYYGLNFFYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVK DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 10 NAG singleParticle particle 3 8.0
2 mM Tris pH 8.0, 200 mM NaCl, 0.02% (w/v) sodium azide, 3% (v/v) glycerol, 0.25% CHAPS, and 0.1% (w/v) amphipol A8-35
 C-flat-1.2/1.3 COPPER 400 GLOW DISCHARGE ETHANE 100 277 FEI VITROBOT MARK IV
Soluble ectodomain of human cytomegalovirus (HCMV) glycoprotein B (gB) in the postfusion conformation, 1G2 Fab, and 7H3 Fab purified separately, mixed, and incubated for 30 minutes on ice prior to grid preparation
 TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 3.0 GATAN K3 (6k x 4k) 1 8679 80.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION C1 3.4 FSC 0.143 CUT-OFF cryoSPARC 4.2.0 211132 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_43667.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 426.59836 426.59836 426.59836 90.0 90.0 90.0 X Y Z -0.64084613 1.0011692 0.00014917551 0.015032465 0.8331999 0.8331999 0.8331999 0.17 AUTHOR Sharpened emd_43667_msk_1.map emd_43667_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 426.59836 426.59836 426.59836 90.0 90.0 90.0 X Y Z -0.14289212 0.4208071 0.00014917551 0.00890638 0.8331999 0.8331999 0.8331999 AUTHOR Unsharpened emd_43667_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 426.59836 426.59836 426.59836 90.0 90.0 90.0 X Y Z -0.22996889 0.5394684 0.00039836054 0.024969377 0.8331999 0.8331999 0.8331999 AUTHOR Half A emd_43667_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 426.59836 426.59836 426.59836 90.0 90.0 90.0 X Y Z -0.2456274 0.5347049 0.00040303532 0.02505966 0.8331999 0.8331999 0.8331999 AUTHOR Half B