2024-11-27 REL RCSB RCSB RCSB 2024-01-03 2024-10-23 2024-10-23 2024-11-27 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI168178 United States Protective effect of human non-neutralizing cross-reactive spike antibodies elicited by SARS-CoV-2 mRNA vaccination Bajic G antibody, SARS-CoV-2, spike, IMMUNE SYSTEM Clark JJ Hoxie I Adelsberg DC Sapse IA Andreata-Santos R Yong JS Amanat F Tcheou J Raskin A Singh G Gonzalez-Dominguez I Edgar JE Bournazos S Sun W Carreno JM Simon V Ellebedy AH Bajic G Krammer F Protective effect and molecular mechanisms of human non-neutralizing cross-reactive spike antibodies elicited by SARS-CoV-2 mRNA vaccination. Cell Rep US 43 114922 114922 2024 39504245 doi:10.1016/j.celrep.2024.114922 2211-1247 Clark J Hoxie I Adelsberg DC Sapse IA Andreata-Santos R Yong JS Amanat F Tcheou J Raskin A Singh G Gonzalez-Dominguez I Edgar JE Bournazos S Sun W Carreno JM Simon V Ellebedy AH Bajic G Krammer F Protective effect and molecular mechanisms of human non-neutralizing cross-reactive spike antibodies elicited by SARS-CoV-2 mRNA vaccination. Biorxiv US 2024 38464151 doi:10.1101/2024.02.28.582613 2692-8205 8via FULLOVERLAP SARS-CoV-2 spike in complex with PVI.V5-4 Fab SARS-CoV-2 spike in complex with PVI.V5-4 Fab 0 1 2 3 4 Homo sapiens 500 Spike protein S1 Severe acute respiratory syndrome coronavirus 2 0.074113141 1 Homo sapiens LEVO CVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFAS TEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQP FLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDS SSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITN LCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQ TGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQS YGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTD AVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAE HVNNSYECDIPIGAGICASYQT P0DTC2 Spike protein S2 Severe acute respiratory syndrome coronavirus 2 0.062353124999999995 1 Homo sapiens LEVO QTNSPGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQY GSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQ YGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVL YENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRL ITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFT TAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYF KNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTF LGRSLEVLFQ P0DTC2 PVI.V5-4 heavy chain Homo sapiens 0.025566461 1 Homo sapiens LEVO EVQLVESGGGVVQPGRSLRLSCAASGFTFSNYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLY LQMNSLRAEDTAVYYCARENNYYDSSGYSYYFDYWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKLEVLFQ PVI.V5-4 light chain Homo sapiens 0.023481055 1 Homo sapiens LEVO EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLE PEDFAVYYCQQYGSSPMCSFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 2 NAG singleParticle particle 7.5 ETHANE FEI TITAN KRIOS OTHER OTHER FIELD EMISSION GUN 300 0.8 2.5 GATAN K3 (6k x 4k) 52.51 1 3.6 FSC 0.143 CUT-OFF 120000 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION emd_43255.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 547.328 547.328 547.328 90.0 90.0 90.0 X Y Z -0.0017185479 2.238702 0.00024929122 0.011211285 1.069 1.069 1.069 0.1 AUTHOR focused, deepEMhancer sharpened map emd_43255_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 547.328 547.328 547.328 90.0 90.0 90.0 X Y Z -0.5954847 1.5280591 -0.0019513112 0.024074065 1.069 1.069 1.069 AUTHOR focused, unsharpened map emd_43255_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 547.328 547.328 547.328 90.0 90.0 90.0 X Y Z -2.4709468 3.9111502 -0.0019513111 0.047442455 1.069 1.069 1.069 AUTHOR focused, cryoSPARC sharpened map emd_43255_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 547.328 547.328 547.328 90.0 90.0 90.0 X Y Z -0.94441235 1.8530096 -0.0006086214 0.09156383 1.069 1.069 1.069 AUTHOR half-map 1 emd_43255_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 547.328 547.328 547.328 90.0 90.0 90.0 X Y Z -0.87455034 1.9052333 -0.0006049433 0.09144898 1.069 1.069 1.069 AUTHOR half-map 2