2024-11-13 REL RCSB RCSB RCSB 2023-12-29 2024-10-02 2024-10-02 2024-11-13 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) DP2-AI164323 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) UM1AI144371 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01AI145687 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) U54AI170752 United States VRC01 Fab bound to the HIV-1 CH848 DE3 SOSIP Henderson R Acharya P Immunogen, Vaccine, Antibody, VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM complex Henderson R Anasti K Manne K Stalls V Saunders C Bililign Y Williams A Bubphamala P Montani M Kachhap S Li J Jaing C Newman A Cain DW Lu X Venkatayogi S Berry M Wagh K Korber B Saunders KO Tian M Alt F Wiehe K Acharya P Alam SM Haynes BF Engineering immunogens that select for specific mutations in HIV broadly neutralizing antibodies. Nat Commun UK 15 9503 9503 2024 39489734 doi:10.1038/s41467-024-53120-9 2041-1723 8vgw FULLOVERLAP Antibody Fab bound HIV-1 ectodomain Antibody Fab bound HIV-1 ectodomain 0 1 2 3 4 Human immunodeficiency virus 1 CH848 DE3 SOSIP gp120 Human immunodeficiency virus 1 0.052847906 3 Homo sapiens LEVO AENLWVTVYYGVPVWKEAKTTLFCASDARAYEKEVHNVWATHACVPTDPSPQELVLGNVTENFNMWKNDMVDQMHEDIIS LWDQSLKPCVKLTPLCVTLICSNATVKNGTVEEMKNCSFNTTTEIRDKEKKEYALFYKPDIVPLSETNNTSEYRLINCNT SACTQACPKVTFEPIPIHYCAPAGYAILKCNDETFNGTGPCSNVSTVQCTHGIRPVVSTQLLLNGSLAEKEIVIRSENLT NNAKIIIVHLHTPVEIVCTRPNNNTRKSVRIGPGQTFYATGDIIGDIKQAHCNISEEKWNDTLQKVGIELQKHFPNKTIK YNQSAGGDMEITTHSFNCGGEFFYCNTSNLFNGTYNGTYISTNSSANSTSTITLQCRIKQIINMWQGVGRCMYAPPIAGN ITCRSNITGLLLTRDGGTNSNETETFRPAGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR A0A1W6IPB2 CH848 DE3 SOSIP gp41 Human immunodeficiency virus 1 0.017180564 3 Homo sapiens LEVO AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAIEAQQHMLKLTVWGIKQLQARVLAVERYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD A0A1W6IPB2 VRC01 Fab Heavy Chain Homo sapiens 0.013801700999999998 3 Homo sapiens LEVO QVQLVQSGGQMKKPGESMRISCRASGYEFIDCTLNWIRLAPGKRPEWMGWLKPRGGAVNYARPLQGRVTMTRDVYSDTAF LELRSLTVDDTAVYFCTRGKNCDYNWDFEHWGRGTPVIVSS VRC01 Fab Light Chain Homo sapiens 0.011100211999999998 3 Homo sapiens LEVO EIVLTQSPGTLSLSPGETAIISCRTSQYGSLAWYQQRPGQAPRLVIYSGSTRAAGIPDRFSGSRWGPDYNLTISNLESGD FGVYYCQQYEFFGQGTKVQVD singleParticle particle 7.1 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.42 4.71 GATAN K3 (6k x 4k) 60.0 1 3.9 FSC 0.143 CUT-OFF 220881 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_43228.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 324.0 324.0 324.0 90.0 90.0 90.0 X Y Z -8.053781499999999 13.169943 0.0076852343 0.26091546 1.08 1.08 1.08 2.1 AUTHOR emd_43228_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 324.0 324.0 324.0 90.0 90.0 90.0 X Y Z -0.16841124 1.7125989 0.010134517 0.13119523 1.08 1.08 1.08 AUTHOR emd_43228_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 300 300 300 0 0 0 300 300 300 324.0 324.0 324.0 90.0 90.0 90.0 X Y Z -0.16598262 1.7020487 0.010076393 0.13123374 1.08 1.08 1.08 AUTHOR