2026-09-16 REL PDBe INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update STRUCTURE_SUMMARY chem_comp_atom chem_comp_bond database_2 em_admin pdbx_entry_details pdbx_modification_feature _database_2.pdbx_DOI _database_2.pdbx_database_accession _em_admin.last_update REMEDIATION REPOSITORY Metalloprotein remediation DERIVED_CALCULATIONS em_admin pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order _em_admin.last_update DATA_COLLECTION em_admin _em_admin.last_update PDBe PDBe 2018-02-25 2018-08-08 2018-08-08 2026-09-16 Wellcome Trust United Kingdom Sundaramoorthy R Owen-hughes T Chromatin remodellers, MOTOR PROTEIN Sundaramoorthy R Hughes AL El-Mkami H Norman DG Ferreira H Owen-Hughes T Elife US 7 2018 30079888 doi:10.7554/eLife.35720 2050-084X EMD-3502 other EM volume 6ftx FULLOVERLAP EMDB EMD-3502 other EM volume EMDB EMD-4318 associated EM volume

Structure of the chromatin remodelling enzyme Chd1 bound to a ubiquitinylated nucleosome

X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1 X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1 0 1 2 3 4 5 6 7 8 9 0.450 X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1 1 1 2 3 4 5 Xenopus laevis X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1 1 6 7 synthetic construct X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1 1 8 Saccharomyces cerevisiae X. laevis nucleosome pn 601 DNA with S.cerevisiae remodeller Chd1 1 9 Homo sapiens Histone H3 Petromyzon marinus 0.011431357999999999 1 Escherichia coli LEVO PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRV TIMPKDIQLARRIRGER S4RAZ3 Histone H4 Xenopus laevis 0.011394426 2 Escherichia coli LEVO MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRK TVTAMDVVYALKRQGRTLYGFGG P62799 Histone H2A type 1 Xenopus laevis 0.014093435999999999 2 Escherichia coli LEVO MSGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRII PRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESAKSAKSK P06897 Histone H2B Xenopus tropicalis 0.013939227999999998 2 Escherichia coli LEVO MPDPAKSAPAAKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASR LAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK F6TNY0 Histone H3.3C Xenopus laevis 0.01232933 1 Escherichia coli LEVO AAAAAAAAAAAAAHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFE DTNLCAIHAKRVTIMPKDIQLARRIRGERA P02302 DNA (159-MER) synthetic construct 0.048792086 1 (DA)(DT)(DA)(DC)(DG)(DC)(DG)(DG)(DC)(DC)(DG)(DC)(DC)(DC)(DA)(DT)(DC)(DA)(DG)(DA) (DA)(DT)(DC)(DC)(DC)(DG)(DG)(DT)(DG)(DC)(DC)(DG)(DA)(DG)(DG)(DC)(DC)(DG)(DC)(DT) (DC)(DA)(DA)(DT)(DT)(DG)(DG)(DT)(DC)(DG)(DT)(DA)(DG)(DA)(DC)(DA)(DG)(DC)(DT)(DC) (DT)(DA)(DG)(DC)(DA)(DC)(DC)(DG)(DC)(DT)(DT)(DA)(DA)(DA)(DC)(DG)(DC)(DA)(DC)(DG) (DT)(DA)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DT)(DC)(DC)(DC)(DC)(DC)(DG)(DC)(DG)(DT)(DT) (DT)(DT)(DA)(DA)(DC)(DC)(DG)(DC)(DC)(DA)(DA)(DG)(DG)(DG)(DG)(DA)(DT)(DT)(DA)(DC) (DT)(DC)(DC)(DC)(DT)(DA)(DG)(DT)(DC)(DT)(DC)(DC)(DA)(DG)(DG)(DC)(DA)(DC)(DG)(DT) (DG)(DT)(DC)(DA)(DG)(DA)(DT)(DA)(DT)(DA)(DT)(DA)(DC)(DA)(DT)(DC)(DG)(DA)(DT) DNA DNA (160-MER) synthetic construct 0.049678612999999996 1 (DA)(DT)(DC)(DG)(DA)(DT)(DG)(DT)(DA)(DT)(DA)(DT)(DA)(DT)(DC)(DT)(DG)(DA)(DC)(DA) (DC)(DG)(DT)(DG)(DC)(DC)(DT)(DG)(DG)(DA)(DG)(DA)(DC)(DT)(DA)(DG)(DG)(DG)(DA)(DG) (DT)(DA)(DA)(DT)(DC)(DC)(DC)(DC)(DT)(DT)(DG)(DG)(DC)(DG)(DG)(DT)(DT)(DA)(DA)(DA) (DA)(DC)(DG)(DC)(DG)(DG)(DG)(DG)(DG)(DA)(DC)(DA)(DG)(DC)(DG)(DC)(DG)(DT)(DA)(DC) (DG)(DT)(DG)(DC)(DG)(DT)(DT)(DT)(DA)(DA)(DG)(DC)(DG)(DG)(DT)(DG)(DC)(DT)(DA)(DG) (DA)(DG)(DC)(DT)(DG)(DT)(DC)(DT)(DA)(DC)(DG)(DA)(DC)(DC)(DA)(DA)(DT)(DT)(DG)(DA) (DG)(DC)(DG)(DG)(DC)(DC)(DT)(DT)(DC)(DG)(DG)(DC)(DA)(DC)(DC)(DG)(DG)(DG)(DA)(DT) (DT)(DC)(DT)(DG)(DA)(DT)(DG)(DG)(DG)(DC)(DG)(DG)(DC)(DC)(DG)(DC)(DG)(DT)(DA)(DT) DNA Polyubiquitin-B Homo sapiens 0.008576831 2 Escherichia coli LEVO MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG P0CG47 Chromatin-remodeling ATPase Saccharomyces cerevisiae 0.102152859 1 Escherichia coli LEVO DFHGIDIVINHRLKTSKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYV TAEDIEIMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNRE NSKILPQYSSNYTSQRPRFEKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR RQNGPHIIVVPLSTMPAWLDTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL GSIKWQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFNQDEEQEEYIHDLHRRIQ PFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEER VLQKFMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISID HFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARK KMILEYDMDSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAAKDCVHEEEKNRKEILEKLE KHATAYRAKLKSGEIKAENQPKDNPLTRLSLKKREKKAVLFNFKGVKSLNAESLLSRVEDLKYLKNLINSNYKDDPLKFS LGNNTPKPVQNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLGITDKIFLKKVPGAIHLGRRVDYLLSFLRGGLN BERYLLIUM TRIFLUORIDE ION 6.600700000000001e-05 1 BEF ADENOSINE-5'-DIPHOSPHATE 0.000427201 1 ADP singleParticle particle 1 7.5 20.0 Hepes 100.0 NaCl C-flat-1.2/1.3 4C COPPER 400 GLOW DISCHARGE 60 OTHER ETHANE 100 277 FEI VITROBOT MARK III

Sample was gel filtration purified and it is monodisperse

FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 1.5 1.5 4.0 4.0 35714.0 35714.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN 170.0 170.0 GIF Quantum LS GATAN K2 QUANTUM (4k x 4k) COUNTING 3870 3870 5-28 1 1300 0.32 1.25 1 860000 Gctf PHASE FLIPPING AND AMPLITUDE CORRECTION EMD-3502 1 C1 FOURIER SPACE 4.5 FSC 0.143 CUT-OFF RELION 135000 ANGULAR RECONSTITUTION RELION ANGULAR RECONSTITUTION RELION RELION FLEXIBLE FIT Cross-correlation coefficient RECIPROCAL 204.0