<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-4305" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2018-06-13</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2018-02-21</deposition>
            <header_release>2018-05-02</header_release>
            <map_release>2018-05-02</map_release>
            <update>2018-06-13</update>
        </key_dates>
        <title>Correlative cryo-FM and Cryo-ET of vitreous sections of yeast cells</title>
        <authors_list>
            <author>Bharat TAM</author>
            <author>Hoffmann PC</author>
            <author>Kukulski W</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Bharat TAM</author>
                    <author order="2">Hoffmann PC</author>
                    <author order="3">Kukulski W</author>
                    <title>Correlative Microscopy of Vitreous Sections Provides Insights into BAR-Domain Organization In Situ.</title>
                    <journal_abbreviation>Structure</journal_abbreviation>
                    <country>UK</country>
                    <volume>26</volume>
                    <first_page>879</first_page>
                    <last_page>886.e3</last_page>
                    <year>2018</year>
                    <external_references type="PUBMED">29681471</external_references>
                    <external_references type="DOI">doi:10.1016/j.str.2018.03.015</external_references>
                    <external_references type="ISSN">1878-4186</external_references>
                    <external_references type="CSD">2005</external_references>
                    <external_references type="ASTM">STRUE6</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-4305</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Saccharomyces cerevisiae</name>
        <supramolecule_list>
            <cell_supramolecule supramolecule_id="1">
                <name>Saccharomyces cerevisiae</name>
                <parent>0</parent>
                <details>genotype: 
MATalpha, his3delta200, leu2-3,112, ura3-52, lys2-801, PIL1-EGFP::HIS3MX6</details>
                <natural_source database="NCBI">
                    <organism ncbi="559292">Saccharomyces cerevisiae S288c</organism>
                </natural_source>
            </cell_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>tomography</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <tomography_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <fiducial_markers_list>
                        <fiducial_marker>
                            <manufacturer>CMC Utrecht</manufacturer>
                            <diameter units="nanometer">10</diameter>
                        </fiducial_marker>
                    </fiducial_markers_list>
                    <high_pressure_freezing>
                        <instrument>OTHER</instrument>
                        <details>The value given for _emd_high_pressure_freezing.instrument is Leica HPM100. This is not in a list of allowed values set(['LEICA EM PACT2', 'LEICA EM PACT', 'EMS-002 RAPID IMMERSION FREEZER', 'OTHER', 'LEICA EM HPM100', 'BAL-TEC HPM 010']) so OTHER is written into the XML file.</details>
                    </high_pressure_freezing>
                    <sectioning>
                        <ultramicrotomy>
                            <instrument>Leica</instrument>
                            <temperature units="K">100</temperature>
                            <final_thickness>150</final_thickness>
                        </ultramicrotomy>
                    </sectioning>
                </tomography_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <tomography_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <specialist_optics>
                        <energy_filter>
                            <name>GIF Quantum LS</name>
                            <slit_width units="eV">20</slit_width>
                            <lower_energy_threshold units="eV">0</lower_energy_threshold>
                            <upper_energy_threshold units="eV">20</upper_energy_threshold>
                        </energy_filter>
                    </specialist_optics>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K2 SUMMIT (4k x 4k)</film_or_detector_model>
                            <detector_mode>COUNTING</detector_mode>
                            <average_electron_dose_per_image units="e/&#8491;^2">0.9</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </tomography_microscopy>
            </microscopy_list>
            <tomography_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <algorithm>SIMULTANEOUS ITERATIVE (SIRT)</algorithm>
                    <software_list>
                        <software>
                            <name>IMOD</name>
                        </software>
                    </software_list>
                    <number_images_used>121</number_images_used>
                </final_reconstruction>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>IMOD</name>
                        </software>
                    </software_list>
                </ctf_correction>
            </tomography_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="232423">
        <file>emd_4305.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS SIGNED BYTE</data_type>
        <dimensions>
            <col>958</col>
            <row>926</row>
            <sec>262</sec>
        </dimensions>
        <origin>
            <col>16</col>
            <row>-16</row>
            <sec>151</sec>
        </origin>
        <spacing>
            <x>958</x>
            <y>926</y>
            <z>262</z>
        </spacing>
        <cell>
            <a units="&#8491;">13737.72</a>
            <b units="&#8491;">13278.84</b>
            <c units="&#8491;">3757.08</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-128.</minimum>
            <maximum>127.</maximum>
            <average>64.033810000000003</average>
            <std>97.644189999999995</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">14.34</x>
            <y units="&#8491;">14.34</y>
            <z units="&#8491;">14.34</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-4305::::</label>
        <annotation_details>This is a tomogram of a vitreous section of yeast cells expressing Pil1-GFP. There are two eisosomal sites seen.</annotation_details>
    </map>
</emd>