<?xml version="1.0" encoding="UTF-8"?>
<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:noNamespaceSchemaLocation="https://ftp.ebi.ac.uk/pub/databases/em_ebi/emdb_related/emdb-schemas/emdb_schemas/v3/v3_0_9_3/emdb.xsd" version="3.0.9.3" emdb_id="EMD-42938">
    <admin>
        <current_status>
            <date>2024-11-27</date>
            <code>REL</code>
            <processing_site>RCSB</processing_site>
        </current_status>
        <sites>
            <deposition>RCSB</deposition>
            <last_processing>RCSB</last_processing>
        </sites>
        <key_dates>
            <deposition>2023-11-25</deposition>
            <header_release>2024-05-01</header_release>
            <map_release>2024-05-01</map_release>
            <update>2024-11-27</update>
        </key_dates>
        <grant_support>
            <grant_reference>
                <funding_body>National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK)</funding_body>
                <country>United States</country>
            </grant_reference>
        </grant_support>
        <title>Cryo-EM Structure of Smooth Muscle Gamma Actin (ACTG2) Mutant R257C</title>
        <authors_list>
            <author>Palmer NJ</author>
            <author>Carman PJ</author>
            <author>Ceron RH</author>
            <author>Dominguez R</author>
        </authors_list>
        <keywords>Filament, Actin, Smooth Muscle, CYTOSOLIC PROTEIN, STRUCTURAL PROTEIN</keywords>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author ORCID="0000-0002-0364-1853" order="1">Ceron RH</author>
                    <author ORCID="0000-0002-0312-870X" order="2">Baez-Cruz FA</author>
                    <author ORCID="0000-0003-1885-9019" order="3">Palmer NJ</author>
                    <author ORCID="0000-0002-6120-5507" order="4">Carman PJ</author>
                    <author ORCID="0000-0003-1677-023X" order="5">Boczkowska M</author>
                    <author ORCID="0000-0002-3282-1765" order="6">Heuckeroth RO</author>
                    <author ORCID="0000-0003-0544-9360" order="7">Ostap EM</author>
                    <author ORCID="0000-0003-3186-5229" order="8">Dominguez R</author>
                    <title>Molecular mechanisms linking missense ACTG2 mutations to visceral myopathy.</title>
                    <journal_abbreviation>Sci Adv</journal_abbreviation>
                    <country>US</country>
                    <volume>10</volume>
                    <first_page>eadn6615</first_page>
                    <last_page>eadn6615</last_page>
                    <year>2024</year>
                    <external_references type="PUBMED">38820162</external_references>
                    <external_references type="DOI">doi:10.1126/sciadv.adn6615</external_references>
                    <external_references type="ISSN">2375-2548</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <pdb_list>
            <pdb_reference>
                <pdb_id>8v2z</pdb_id>
                <relationship>
                    <in_frame>FULLOVERLAP</in_frame>
                </relationship>
            </pdb_reference>
        </pdb_list>
    </crossreferences>
    <sample>
        <name>ACTG2 R257C Filament</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>ACTG2 R257C Filament</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>ACTG2 filaments, purified from Expi293 cells</details>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                    <tissue>Smooth</tissue>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>Actin, gamma-enteric smooth muscle</name>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                    <tissue>Smooth Muscle</tissue>
                </natural_source>
                <molecular_weight>
                    <theoretical units="MDa">0.041881762</theoretical>
                </molecular_weight>
                <number_of_copies>5</number_of_copies>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="9606">Homo sapiens</recombinant_organism>
                </recombinant_expression>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>MCEEETTALVCDNGSGLCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIE(HIC)GI
ITNWDDMEKIWHHSFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDS
GDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSS
LEKSYELPDGQVITIGNERFCCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQK
EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKPEYDEAGPSIVHRKCF</string>
                    <external_references type="UNIPROTKB">P63267</external_references>
                </sequence>
                <ec_number>3.6.4.-</ec_number>
            </protein_or_peptide>
            <ligand macromolecule_id="2">
                <name>ADENOSINE-5'-DIPHOSPHATE</name>
                <molecular_weight>
                    <theoretical units="MDa">0.000427201</theoretical>
                </molecular_weight>
                <number_of_copies>5</number_of_copies>
                <formula>ADP</formula>
            </ligand>
            <ligand macromolecule_id="3">
                <name>MAGNESIUM ION</name>
                <molecular_weight>
                    <theoretical units="MDa">2.4305e-05</theoretical>
                </molecular_weight>
                <number_of_copies>5</number_of_copies>
                <formula>MG</formula>
            </ligand>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>helical</method>
            <aggregation_state>filament</aggregation_state>
            <specimen_preparation_list>
                <helical_preparation preparation_id="1">
                    <concentration units="mg/mL">0.168</concentration>
                    <buffer>
                        <ph>8.0</ph>
                        <component>
                            <concentration units="mM">5.0</concentration>
                            <formula>C4H11NO3</formula>
                            <name>Tris</name>
                        </component>
                        <component>
                            <concentration units="mM">100.0</concentration>
                            <formula>KCl</formula>
                            <name>Potassium Chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">0.2</concentration>
                            <formula>CaCl2</formula>
                            <name>Calcium Chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">1.0</concentration>
                            <formula>C14H24N2O10</formula>
                            <name>EGTA</name>
                        </component>
                        <component>
                            <concentration units="mM">1.0</concentration>
                            <formula>MgCl2</formula>
                            <name>Magnesium Chloride</name>
                        </component>
                        <component>
                            <concentration units="mM">0.2</concentration>
                            <formula>C10H15N5O10P2</formula>
                            <name>ATP</name>
                        </component>
                        <details>Actin F-buffer</details>
                    </buffer>
                    <grid>
                        <model>Quantifoil R1.2/1.3</model>
                        <material>COPPER</material>
                        <mesh>200</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY</film_topology>
                            <film_thickness>12.0</film_thickness>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <time units="s">120</time>
                            <atmosphere>AIR</atmosphere>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <chamber_temperature units="K">277</chamber_temperature>
                        <instrument>FEI VITROBOT MARK III</instrument>
                        <details>Blot Force: 0
Blot Time: 2.5 s. </details>
                    </vitrification>
                    <details>ACTG2 F-actin in the ADP state.
R257C mutation</details>
                </helical_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <helical_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>SPOT SCAN</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_defocus_min units="µm">0.5</nominal_defocus_min>
                    <nominal_defocus_max units="µm">2.5</nominal_defocus_max>
                    <nominal_magnification>81000.0</nominal_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>GATAN K3 (6k x 4k)</film_or_detector_model>
                            <number_real_images>1021</number_real_images>
                            <average_electron_dose_per_image units="e/Å^2">45.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </helical_microscopy>
            </microscopy_list>
            <helical_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <applied_symmetry>
                        <helical_parameters>
                            <delta_z units="Å">27.5</delta_z>
                            <delta_phi units="deg">-166.6</delta_phi>
                            <axial_symmetry>C1</axial_symmetry>
                        </helical_parameters>
                    </applied_symmetry>
                    <resolution units="Å" res_type="BY AUTHOR">2.72</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>cryoSPARC</name>
                            <version>4.0</version>
                            <processing_details>Helix Refinement</processing_details>
                        </software>
                    </software_list>
                    <number_images_used>473627</number_images_used>
                </final_reconstruction>
                <startup_model type_of_model="PDB ENTRY">
                    <pdb_model>
                        <pdb_id>8F8P</pdb_id>
                    </pdb_model>
                    <details>Individually mutated residues within structure of skeletal muscle actin until each subunit had the sequence of gamma smooth muscle actin with R257C.</details>
                </startup_model>
                <final_angle_assignment>
                    <type>NOT APPLICABLE</type>
                </final_angle_assignment>
            </helical_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="67109">
        <file>emd_42938.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>256</col>
            <row>256</row>
            <sec>256</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>256</x>
            <y>256</y>
            <z>256</z>
        </spacing>
        <cell>
            <a units="Å">273.92</a>
            <b units="Å">273.92</b>
            <c units="Å">273.92</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.22858354</minimum>
            <maximum>0.9803461</maximum>
            <average>0.0031954448</average>
            <std>0.036359396</std>
        </statistics>
        <pixel_spacing>
            <x units="Å">1.07</x>
            <y units="Å">1.07</y>
            <z units="Å">1.07</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.163</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-42938::::</label>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <initial_model>
                    <access_code>8F8P</access_code>
                    <chain>
                        <source_name>PDB</source_name>
                        <initial_model_type>experimental model</initial_model_type>
                    </chain>
                </initial_model>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
        <segmentation_list>
            <segmentation>
                <file>emd_42938_msk_1.map</file>
            </segmentation>
        </segmentation_list>
        <half_map_list>
            <half_map format="CCP4" size_kbytes="67109">
                <file>emd_42938_half_map_2.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>256</col>
                    <row>256</row>
                    <sec>256</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>256</x>
                    <y>256</y>
                    <z>256</z>
                </spacing>
                <cell>
                    <a units="Å">273.92</a>
                    <b units="Å">273.92</b>
                    <c units="Å">273.92</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.4333658</minimum>
                    <maximum>1.0503969</maximum>
                    <average>0.0011117717</average>
                    <std>0.0641952</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.07</x>
                    <y units="Å">1.07</y>
                    <z units="Å">1.07</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-42938::::</label>
            </half_map>
            <half_map format="CCP4" size_kbytes="67109">
                <file>emd_42938_half_map_1.map.gz</file>
                <symmetry>
                    <space_group>1</space_group>
                </symmetry>
                <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
                <dimensions>
                    <col>256</col>
                    <row>256</row>
                    <sec>256</sec>
                </dimensions>
                <origin>
                    <col>0</col>
                    <row>0</row>
                    <sec>0</sec>
                </origin>
                <spacing>
                    <x>256</x>
                    <y>256</y>
                    <z>256</z>
                </spacing>
                <cell>
                    <a units="Å">273.92</a>
                    <b units="Å">273.92</b>
                    <c units="Å">273.92</c>
                    <alpha units="deg">90.0</alpha>
                    <beta units="deg">90.0</beta>
                    <gamma units="deg">90.0</gamma>
                </cell>
                <axis_order>
                    <fast>X</fast>
                    <medium>Y</medium>
                    <slow>Z</slow>
                </axis_order>
                <statistics>
                    <minimum>-0.48092645</minimum>
                    <maximum>1.2097868</maximum>
                    <average>0.0010312935</average>
                    <std>0.06429277</std>
                </statistics>
                <pixel_spacing>
                    <x units="Å">1.07</x>
                    <y units="Å">1.07</y>
                    <z units="Å">1.07</z>
                </pixel_spacing>
                <contour_list>
                    <contour primary="true">
                        <source>AUTHOR</source>
                    </contour>
                </contour_list>
                <label>::::EMDATABANK.org::::EMD-42938::::</label>
            </half_map>
        </half_map_list>
    </interpretation>
</emd>
