2024-04-24 REL RCSB RCSB RCSB 2023-11-19 2024-01-31 2024-01-31 2024-04-24 Simons Foundation SF349247 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM103310 United States 3x3 tiled montage tomogram of a yeast lamella imaged with a square electron beam Chua EYD Alink LM Kopylov M Johnston J Einsenstein F de Marco A FIB-milled yeast, UNKNOWN FUNCTION Chua EYD Alink LM Kopylov M Johnston JD Eisenstein F de Marco A Square beams for optimal tiling in transmission electron microscopy. Nat.Methods US 21 562 565 2024 38238558 doi:10.1038/s41592-023-02161-x 1548-7105 EMD-42851 other EM volume
5x5 montage tomogram of a carbon foil grid with apoferritin collected with a square electron beam
 Yeast Yeast 0 Saccharomyces cerevisiae tomography cell 7.5
YPD media
 Quantifoil R2/2 COPPER 200 CARBON HOLEY GLOW DISCHARGE OTHER
Gatan Solarus I
Extrapolated OD 600 ~20
OTHER
Sample was high-pressure frozen directly on a 200 mesh grid sandwiched between two flat sides of 3 mm planchettes. The value given for _em_high_pressure_freezing.instrument is Wohlwend HPF Compact 01. This is not in a list of allowed values {'LEICA EM HPM100', 'OTHER', 'LEICA EM PACT', 'BAL-TEC HPM 010', 'EMS-002 RAPID IMMERSION FREEZER', 'LEICA EM PACT2'} so OTHER is written into the XML file.
 5% glycerol OTHER OTHER 30 2 300 77 500 200
Lamellae were prepared using TFS AutoTEM. The settings specified are for the final polishing only. The complete set of parameters is described in the Waffle Method protocol paper here: https://ncbi.nlm.nih.gov/pmc/articles/PMC9795037/. The value given for _em_focused_ion_beam.instrument is Aquilos 2. This is not in a list of allowed values {'DB235', 'OTHER'} so OTHER is written into the XML file.
 FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 2.5 5.0 GATAN K3 BIOQUANTUM (6k x 4k) 2.55 1 TOMO3D 279 emd_42879.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 1547 1536 1546 -153 0 -993 1547 1536 1546 12376.0 12288.0 12368.0 90.0 90.0 90.0 X Y Z -1367.117999999999938 1220.756800000000112 -0.18173476 61.159480000000002 8.0 8.0 8.0 AUTHOR