<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-4265" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2018-03-14</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2018-01-16</deposition>
            <header_release>2018-03-07</header_release>
            <map_release>2018-03-07</map_release>
            <update>2018-03-14</update>
        </key_dates>
        <title>Human cap-dependent 48S pre-initiation complex</title>
        <authors_list>
            <author>Schaffitzel C</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Eliseev B</author>
                    <author order="2">Yeramala L</author>
                    <author order="3">Leitner A</author>
                    <author order="4">Karuppasamy M</author>
                    <author order="5">Raimondeau E</author>
                    <author order="6">Huard K</author>
                    <author order="7">Alkalaeva E</author>
                    <author order="8">Aebersold R</author>
                    <author order="9">Schaffitzel C</author>
                    <title>Structure of a human cap-dependent 48S translation pre-initiation complex.</title>
                    <journal_abbreviation>Nucleic Acids Res.</journal_abbreviation>
                    <country>UK</country>
                    <year>2018</year>
                    <external_references type="PUBMED">29401259</external_references>
                    <external_references type="DOI">doi:10.1093/nar/gky054</external_references>
                    <external_references type="ISSN">1362-4962</external_references>
                    <external_references type="CSD">0389</external_references>
                    <external_references type="ASTM">NARHAD</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-4242</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Human 48S pre-initiation complex with eIF2, eIF3 and eIF4B</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-4265</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
                <details>Human cap-dependent 48S pre-initiation complex</details>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>human cap-dependent 48S translation pre-initiation complex</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>human cap-dependent 48S translation pre-initiation complex</name>
                <parent>0</parent>
                <macromolecule_list>
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                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    </macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    </macromolecule>
                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    </macromolecule>
                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
                        <macromolecule_id>36</macromolecule_id>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
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                    <macromolecule>
                        <macromolecule_id>50</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <details>This map comprises human 40S, mRNA, initiator tRNA, eIF2 and eIF4B RRM
obtained from multiple sources as described in the publication.</details>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <molecular_weight>
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                        <ph>7.5</ph>
                        <details>20 mM Tris HCl,  
50 mM KOAc, 
2.5 mM MgCl2, 
2 mM DTT, 
0.25 mM spermidine
0.25 mM GMPPNP</details>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/2</model>
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                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
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                        <chamber_temperature units="K">277</chamber_temperature>
                        <instrument>FEI VITROBOT MARK IV</instrument>
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            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TITAN KRIOS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
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                    <nominal_magnification>112000.</nominal_magnification>
                    <specimen_holder_model>FEI TITAN KRIOS AUTOGRID HOLDER</specimen_holder_model>
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                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON II (4k x 4k)</film_or_detector_model>
                            <detector_mode>INTEGRATING</detector_mode>
                            <average_electron_dose_per_image units="e/&#8491;^2">30.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
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            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>CTFFIND</name>
                            <version>4</version>
                        </software>
                    </software_list>
                </ctf_correction>
                <startup_model type_of_model="EMDB MAP">
                    <emdb_id>EMD-3019</emdb_id>
                </startup_model>
                <final_reconstruction>
                    <number_classes_used>1</number_classes_used>
                    <applied_symmetry>
                        <point_group>C1</point_group>
                    </applied_symmetry>
                    <algorithm>BACK PROJECTION</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">6.6</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
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                            <version>1.4</version>
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                    </software_list>
                    <number_images_used>70283</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing />
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.4</version>
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                <final_angle_assignment>
                    <type>PROJECTION MATCHING</type>
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                        <software>
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                <final_three_d_classification>
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            <fast>X</fast>
            <medium>Y</medium>
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        <statistics>
            <minimum>-0.28490633</minimum>
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        <label>::::EMDATABANK.org::::EMD-4265::::</label>
        <annotation_details>48S pre-initiation complex with eIF2, initiator-tRNA and eIF4B</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>RIGID BODY FIT</refinement_protocol>
                <target_criteria>Cross-correlation coefficient</target_criteria>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>