2024-07-24 REL RCSB RCSB RCSB 2023-10-19 2023-11-01 2023-11-01 2024-07-24 National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) HL049413 United States National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) HL139554 United States National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) HL147821 United States Childrens Discovery Institute of Washington University and St. Louis Childrens Hospital CDI-CORE-2015-505 United States Childrens Discovery Institute of Washington University and St. Louis Childrens Hospital CDI-CORE-2019-813 United States Foundation for Barnes-Jewish Hospital 3770 United States Other private Washington University Diabetes Research Center DK020579 Other private The Alvin J. Siteman Cancer Center at Barnes-Jewish Hospital and Washington University School of Medicine CA091842 Preliminary map of the Prothrombin-prothrombinase complex on nano discs Stojanovski BM Mohammed BM Di Cera E Coagulation, Prothrombin, Prothrombinase, nanodisc, complex, BLOOD CLOTTING Stojanovski BM Mohammed BM Di Cera E The Prothrombin-Prothrombinase Interaction. Subcell Biochem. UK 104 409 423 2024 38963494 doi:10.1007/978-3-031-58843-3_15 0306-0225 EMD-26061 other EM volume
EMD-26061 has two of the three components shown in the current submission. The current submission is generated from further analysis of the same dataset.
 Prothrombin_Prothrombinase complex on lipid nanodiscs. Prothrombin_Prothrombinase complex on lipid nanodiscs. 0 1
The complex is made of coagulation factor Va (derived from human plasma), coagulation factor Xa (Recombinantly expressed in BHK cells) and Prothrombin (Recombinantly expressed in BHK cells). The nanodisc component of the complex is made of the scaffold protein MSP1E3D1 (Recombinantly expressed in bacteria) and the phospholipid component was Porcine Brain phosphatidylserine.
Homo sapiens Blood Coagulation Factor Va 1 Homo sapiens Blood Coagulation Factor Xa 1
Catalytically inactive full length mutant S379A with C-terminus HPC4 tag.
Homo sapiens Blood Prothrombin 1
Catalytically inactive full length mutant S525A with C-terminus HPC4 tag
Homo sapiens Blood singleParticle particle 0.01 7.4
20 mM HEPES, 150 mM NaCl, and 5 mM CaCl2
 COPPER 300 CARBON HOLEY GLOW DISCHARGE ETHANE 100 FEI VITROBOT MARK IV
Prothrombin:FVa:FXa were mixed in 2:1:2 ratio. 0.01 mg/mL total protein was used for freezing.
 TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 50.0 2.7 0.8 2.4 NITROGEN FEI FALCON IV (4k x 4k) 2390 51.28 1 C1 6.47 FSC 0.143 CUT-OFF cryoSPARC 4.3.1 4988 NOT APPLICABLE NOT APPLICABLE 3 3000.0 cryoSPARC 4.3.1 emd_42405.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 481.28 481.28 481.28 90.0 90.0 90.0 X Y Z -0.19871338 0.76784295 0.0016278322 0.028282389 0.94 0.94 0.94 0.0839 AUTHOR Unsharpened map AB INITIO MODEL emd_42405_msk_1.map emd_42405_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 481.28 481.28 481.28 90.0 90.0 90.0 X Y Z -2.06891 2.1349719 0.0015165644 0.25067633 0.94 0.94 0.94 AUTHOR original half-map A emd_42405_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 481.28 481.28 481.28 90.0 90.0 90.0 X Y Z -2.0767283 2.1635144 0.0015525362 0.25189933 0.94 0.94 0.94 AUTHOR original half-map B emd_42405_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 481.28 481.28 481.28 90.0 90.0 90.0 X Y Z -0.37364835 1.0389054 0.0015525362 0.053301025 0.94 0.94 0.94 AUTHOR half map B filtered to resolution (6.5A) emd_42405_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 481.28 481.28 481.28 90.0 90.0 90.0 X Y Z -0.37423933 1.0213237 0.0015165644 0.053390957 0.94 0.94 0.94 AUTHOR half map A filtered to resolution (6.5A)