2024-04-17 REL RCSB RCSB RCSB 2023-10-18 2024-04-17 2024-04-17 2024-04-17 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI118932 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI039657 United States National Institutes of Health/National Cancer Institute (NIH/NCI) CA116087 United States Cryo-EM Structure of the Helicobacter pylori cagYdAP PR Roberts JR T4SS, protein translocation, MEMBRANE PROTEIN Roberts JR Tran SC Frick-Cheng AF Bryant KN Okoye CD Cover TL Ohi MD Subdomains of the H. pylori Cag T4SS outer membrane core complex exhibit structural independence Life Science Alliance 2024 doi:10.26508/lsa.202302560 Helicobacter pylori CagYdAP PR Helicobacter pylori CagYdAP PR 0 1 2 Helicobacter pylori 26695 26695 membrane Cag pathogenicity island protein (Cag8) Helicobacter pylori 26695 LEVO MGQAFFKKIV GCFCLGYLFL SSAIEAAALD IKNFNRGRVK VVNKKIAYLG DEKPITIWTS LDNVTVIQLE KDETISYITT GFNKGWSIVP NSNHIFIQPK SVKSNLMFEK EAVNFALMTR DYQEFLKTKK LIVDAPDPKE LEEQKKALEK EKEAKEQAQK AQKDKREKRK EERAKNRANL ENLTNAMSNP QNLSNNKNLS EFIKQQRENE LDQMERLEDM QEQAQANALK QIEELNKKQA EETIKQRAKD KINIKTDKPQ KSPEDNSIEL SPSDSAWRTN LVVRTNKALY QFILRIAQKD NFASAYLTVK LEYPQRHEVS SVIEELKKRE EAKRQKELIK QENLNTTAYI NRVMMASNEQ IINKEKIREE KQKIILDQAK ALETQYVHNA LKRNPVPRNY NYYQAPEKRS KHIMPSEIFD DGTFTYFGFK NITLQPAIFV VQPDGKLSMT DAAIDPNMTN SGLRWYRVNE IAEKFKLIKD KALVTVINKG YGKNPLTKNY NIKNYGELER VIKKLPEVRD K Cag pathogenicity island protein (Cag7) Helicobacter pylori 26695 LEVO MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEETQTQMDSEGNETSESSNGSLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEDDQENNEYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNFDGDKSEEITDDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEXAKESVKAYLDCVSQAKNEAEKKECEKLLTLESKKKLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESVKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDIAKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKAENNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN singleParticle particle 0.4 7.0 NITROGEN TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.5 GIF Bioquantum 20 GATAN K3 (6k x 4k) 60.0 1 C17 6.6 FSC 0.143 CUT-OFF cryoSPARC 4.2.1 22642 MAXIMUM LIKELIHOOD cryoSPARC 4.2.1 MAXIMUM LIKELIHOOD cryoSPARC 4.2.1 emd_42392.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 648 648 648 0 0 0 648 648 648 699.84 699.84 699.84 90.0 90.0 90.0 X Y Z -0.6425841 1.0777255 0.0012483073 0.012570803 1.08 1.08 1.08 0.075 AUTHOR emd_42392_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 648 648 648 0 0 0 648 648 648 699.84 699.84 699.84 90.0 90.0 90.0 X Y Z -0.33324155 0.5178607 0.0006251035 0.029648904 1.08 1.08 1.08 AUTHOR emd_42392_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 648 648 648 0 0 0 648 648 648 699.84 699.84 699.84 90.0 90.0 90.0 X Y Z -0.48065782 0.59832805 0.00062879646 0.029427288 1.08 1.08 1.08 AUTHOR