2024-05-08 REL RCSB RCSB RCSB 2023-10-10 2024-04-17 2024-04-17 2024-05-08 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI118932 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) AI039657 United States National Institutes of Health/National Cancer Institute (NIH/NCI) CA116087 United States Cryo-EM Structure of the Helicobacter pylori CagYdAP OMC Roberts JR T4SS, protein translocation, MEMBRANE PROTEIN Roberts JR Tran SC Frick-Cheng AE Bryant KN Okoye CD McDonald WH Cover TL Ohi MD Subdomains of the Helicobacter pylori Cag T4SS outer membrane core complex exhibit structural independence. Life Sci Alliance US 7 2024 38631913 doi:10.26508/lsa.202302560 2575-1077 Helicobacter pylori CagYdAP OMC Helicobacter pylori CagYdAP OMC 0 1 2 3 4 5 Helicobacter pylori 26695 26695 membrane Type IV secretion system apparatus protein Cag3 Helicobacter pylori 26695 26695 LEVO MFRKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEAKQRQQIPD HKKPQYVSVDDTKTQALFDIYDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSI ENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRNAKFVLKINENMPYAQATFLR VPKRSDPNAHTLDKGASIDENKLFEQQKKMYFNYANDVICRPDDEVCSPLRDEMVAMPTS DSVTQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLVANEE EREKKLLAEKEKQEAELAKYKLKDLENQKKLKALEAELKKKNAKKPRVVEVPVSPQTSNS DETMRVVKEKENYNGLLVDKETTIKRSYEGTLISENSYSKKTPLNPNDLRSLEEEIKSYY IKSNGLCYTNGINLYVKIKNDPYKEGMLCGYESVQNLLSPLKDKLKYDKQKLQKALLKDS K Type IV secretion system apparatus protein CagM Helicobacter pylori 26695 26695 LEVO MLAKIVFSSL VAFGVLSANV EQFGSFFNEI KKEQEEVAAK EDALKARKKL LNNTHDFLED LIFRKQKIKE LMDHRAKVLS DLENKYKKEK EALEKETRGK ILTAKSKAYG DLEQALKDNP LYRKLLPNPY AYVLNQETFT KEDRERLSYY YPQVKTSSIF KKTTATTKDK AQALLQMGVF SLDEEQNKKA SRLALSYKQA IEEYSNNVSN LLSRKELDNI DYYLQLERNK FDSKAKDIAQ KATNTLIFNS ERLAFSMAID KINEKYLRGY EAFSNLLKNV KDDVELNTLT KNFTNQKLSF AQKQKLCLLV LDSFNFDTQS KKSILKKTNE YNIFVDSDPM MSDKTTMQKE HYKIFNFFKT VVSAYRNNVA KNNPFE Type IV secretion system apparatus protein CagT Helicobacter pylori 26695 26695 LEVO MLAKIVFSSL VAFGVLSANV EQFGSFFNEI KKEQEEVAAK EDALKARKKL LNNTHDFLED LIFRKQKIKE LMDHRAKVLS DLENKYKKEK EALEKETRGK ILTAKSKAYG DLEQALKDNP LYRKLLPNPY AYVLNQETFT KEDRERLSYY YPQVKTSSIF KKTTATTKDK AQALLQMGVF SLDEEQNKKA SRLALSYKQA IEEYSNNVSN LLSRKELDNI DYYLQLERNK FDSKAKDIAQ KATNTLIFNS ERLAFSMAID KINEKYLRGY EAFSNLLKNV KDDVELNTLT KNFTNQKLSF AQKQKLCLLV LDSFNFDTQS KKSILKKTNE YNIFVDSDPM MSDKTTMQKE HYKIFNFFKT VVSAYRNNVA KNNPFE Type IV secretion system apparatus protein CagX Helicobacter pylori 26695 26695 LEVO MKLRASVLIGATILCLILSACSNYAKKVVKQKNHVYTPVYNELIEKYSEIPLNDKLKDTP FMVQVKLPNYKDYLLDNKQVVLTFKLVHHSKKITLIGDANKILQYKNYFQANGARSDIDF YLQPTLNQKGVVMIASNYNDNPNSKEKPQTFDVLQGSQPMLGANTKNLHGYDVSGANNKQ VINEVAREKAQLEKINQYYKTLLQDKEQEYTTRKNNQREILETLSNRAGYQMRQNVISSE IFKNGNLNMQAKEEEVREKLQEERENEYLRNQIRSLLSGK Cag pathogenicity island protein (Cag7) Helicobacter pylori 26695 26695 LEVO MGQAFFKKIVGCFCLGYLFLSSAIEAAALDIKNFNRGRVKVVNKKIAYLGDEKPITIWTS LDNVTVIQLEKDETISYITTGFNKGWSIVPNSNHIFIQPKSVKSNLMFEKEAVNFALMTR DYQEFLKTKKLIVDAPDPKELEEQKKALEKEKEAKEQAQKAQKDKREKRKEERAKNRANL ENLTNAMSNPQNLSNNKNLSEFIKQQRENELDQMERLEDMQEQAQANALKQIEELNKKQA EETIKQRAKDKINIKTDKPQKSPEDNSIELSPSDSAWRTNLVVRTNKALYQFILRIAQKD NFASAYLTVKLEYPQRHEVSSVIEEELKKREEAKRQKELIKQENLNTTAYINRVMMASNE QIINKEKIREEKQKIILDQAKALETQYVHNALKRNPVPRNYNYYQAPEKRSKHIMPSEIF DDGTFTYFGFKNITLQPAIFVVQPDGKLSMTDAAIDPNMTNSGLRWYRVNEIAEKFKLIK DKALVTVINKGYGKNPLTKNYNIKNYGELERVIKKLPLVRDK singleParticle particle 0.4 7.0 NITROGEN TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.5 GIF Bioquantum 20 GATAN K3 (6k x 4k) 60.0 1 C14 3.8 FSC 0.143 CUT-OFF cryoSPARC 4.2.1 22463 MAXIMUM LIKELIHOOD cryoSPARC 4.2.1 MAXIMUM LIKELIHOOD cryoSPARC 4.2.1 emd_42290.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 648 648 648 0 0 0 648 648 648 699.84 699.84 699.84 90.0 90.0 90.0 X Y Z -0.403381 0.7904756 0.0035834834 0.02301422 1.08 1.08 1.08 0.13 AUTHOR emd_42290_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 648 648 648 0 0 0 648 648 648 699.84 699.84 699.84 90.0 90.0 90.0 X Y Z -0.9150853 1.0906318 0.001930792 0.08588105 1.08 1.08 1.08 AUTHOR emd_42290_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 648 648 648 0 0 0 648 648 648 699.84 699.84 699.84 90.0 90.0 90.0 X Y Z -0.8944145 0.9775629 0.0019129406 0.086002074 1.08 1.08 1.08 AUTHOR