Cryo-EM structure of the human CPSF160-WDR33-CPSF30 complex bound to the PAS AAUAAA motif at 3.1 Angstrom resolution.

2023-03-01 REL PDBe PDBe PDBe 2017-12-19 2018-01-03 2018-01-31 2023-03-01 European Research Council ERC-StG-337284 Belgium European Molecular Biology Organization EMBO ALTF-343-2013 Germany European Research Council ERC Advanced Grants no. 233226 and no. 670821 Belgium European Union PROSPECTS, HEALTH-F4-2008-201648 Belgium Cryo-EM structure of the human CPSF160-WDR33-CPSF30 complex bound to the PAS AAUAAA motif at 3.1 Angstrom resolution. Clerici M Faini M Jinek M Clerici M Faini M Muckenfuss LM Aebersold R Jinek M Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex. Nat. Struct. Mol. Biol. US 25 135 138 2018 29358758 doi:10.1038/s41594-017-0020-6 1545-9985 EMD-4225 associated EM volume

Cryo-EM structure of the human CPSF160-WDR33-CPSF30 complex bound to the PAS AAUAAA motif at 3.1 Angstrom resolution

6fbs FULLOVERLAP 6fuw unknown Human CPSF160-WDR33-CPSF30 heterotrimer bound to the AAUAAA motif of the Polyadenylation Signal Human CPSF160-WDR33-CPSF30 heterotrimer bound to the AAUAAA motif of the Polyadenylation Signal 0 1 2 3 4 0.22 Human CPSF160-WDR33-CPSF30 heterotrimer 1 1 2 3 Homo sapiens AAUAAA motif of the Polyadenylation Signal 1 4 unidentified adenovirus Cleavage and polyadenylation specificity factor subunit 1 Homo sapiens 0.16134648399999998 1 Spodoptera aff. frugiperda 2 RZ-2014 LEVO SNAMYAVYKQAHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLELAASFSFFGN VMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSLHYFEEPELRDGFVQNVHTPRVRVDPDGRCAAMLVYGT RLVVLPFRRESLAEEHEGLVGEGQRSSFLPSYIIDVRALDEKLLNIIDLQFLHGYYEPTLLILFEPNQTWPGRVAVRQDT CSIVAISLNITQKVHPVIWSLTSLPFDCTQALAVPKPIGGVVVFAVNSLLYLNQSVPPYGVALNSLTTGTTAFPLRTQEG VRITLDCAQATFISYDKMVISLKGGEIYVLTLITDGMRSVRAFHFDKAAASVLTTSMVTMEPGYLFLGSRLGNSLLLKYT EKLQEPPASAVREAADKEEPPSKKKRVDATAGWSAAGKSVPQDEVDEIEVYGSEAQSGTQLATYSFEVCDSILNIGPCAN AAVGEPAFLSEEFQNSPEPDLEIVVCSGHGKNGALSVLQKSIRPQVVTTFELPGCYDMWTVIAPVRKEEEDNPKGEGTEQ EPSTTPEADDDGRRHGFLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVNQLHF IPVDLGAPIVQCAVADPYVVIMSAEGHVTMFLLKSDSYGGRHHRLALHKPPLHHQSKVITLCLYRDLSGMFTTESRLGGA RDELGGRSGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARRSSQPPADRDPAPFRAEPTHWCLLVRENGTMEIY QLPDWRLVFLVKNFPVGQRVLVDSSFGQPTTQGEARREEATRQGELPLVKEVLLVALGSRQSRPYLLVHVDQELLIYEAF PHDSQLGQGNLKVRFKKVPHNINFREKKPKPSKKKAEGGGAEEGAGARGRVARFRYFEDIYGYSGVFICGPSPHWLLVTG RGALRLHPMAIDGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYHVESKVYAVA TSTNTPCARIPRMTGEEKEFETIERDERYIHPQQEAFSIQLISPVSWEAIPNARIELQEWEHVTCMKTVSLRSEETVSGL KGYVAAGTCLMQGEEVTCRGRILIMDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCNGHLVSAIGQKIFLWSLRA SELTGMAFIDTQLYIHQMISVKNFILAADVMKSISLLRYQEESKTLSLVSRDAKPLEVYSVDFMVDNAQLGFLVSDRDRN LMVYMYLPEAKESFGGMRLLRRADFHVGAHVNTFWRTPCRGATEGLSKKSVVWENKHITWFATLDGGIGLLLPMQEKTYR RLLMLQNALTTMLPHHAGLNPRAFRMLHVDRRTLQNAVRNVLDGELLNRYLYLSTMERSELAKKIGTTPDIILDDLLETD RVTAHF pre-mRNA 3' end processing protein WDR33 Homo sapiens 0.047448910000000004 1 Spodoptera aff. frugiperda 2 RZ-2014 LEVO SNAMATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYNPSVIKYLENRIWQRDQR DMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKCPVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETIL QAHDSPVRAMTWSHNDMWMLTADHGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEE RILRGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNGNWLLTASRDHLCKLFDI RNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWHVGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDH TSKFWTRNRPGDK Cleavage and polyadenylation specificity factor subunit 4 Homo sapiens 0.020422855 1 Spodoptera aff. frugiperda 2 RZ-2014 LEVO MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFRHISGEKTVVCKHWLRGLCKKGD QCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCPEGP SCKFMHPRFELPMGTTEQ RNA (5'-R(P*AP*AP*UP*AP*AP*AP*GP*G)-3') unidentified adenovirus 0.0032320359999999998 1 ACAAUAAAGG ZINC ION 6.5409e-05 3 ZN singleParticle particle 0.3 7.5 140.0 KCl Potassium Chloride 20.0 HEPES HEPES 1.0 DTT Dithiothreitol Quantifoil R1.2/1.3 COPPER 400 CARBON HOLEY GLOW DISCHARGE 30 ETHANE-PROPANE 100 293 FEI VITROBOT MARK IV

15 seconds wait time prior to blotting.

FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 1.1 2.2 47259.0 FEI TITAN KRIOS AUTOGRID HOLDER GIF Quantum LS GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1 1070 10.0 80.0 1 263000 6F9N

CPSF160-WDR33 heterodimer

C1 3.07 FSC 0.143 CUT-OFF RELION 2.1b1_cu8.0 137000 RANDOM ASSIGNMENT RELION 2.1b1_cu8.0 PROJECTION MATCHING RELION 2.1b1_cu8.0 emd_4225.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 200 200 200 0 0 0 200 200 200 211.59999 211.59999 211.59999 90.0 90.0 90.0 X Y Z -0.2077625 0.32876167 0.00030825817 0.0140046645 1.058 1.058 1.058 0.058 AUTHOR ::::EMDATABANK.org::::EMD-4225:::: Output from Relion2 PostProcess 6F9N

fitted manually in Coot

RIGID BODY FIT

phenix.real_space_refine

REAL emd_4225_msk_1.map