2024-02-07 REL RCSB RCSB RCSB 2023-10-04 2024-01-17 2024-01-17 2024-02-07 National Institutes of Health/National Eye Institute (NIH/NEI) 1R01EY034867-01 United States Cryo-EM structure of bovine phosphodiesterase 6 Aplin C Cerione RA phosphodiesterase, GPCR effector enzyme, SIGNALING PROTEIN Aplin C Cerione RA Probing the mechanism by which the retinal G protein transducin activates its biological effector PDE6. J.Biol.Chem. US 300 105608 105608 2023 38159849 doi:10.1016/j.jbc.2023.105608 1083-351X 0071 JBCHA3 8ufi FULLOVERLAP Bovine rod phosphodiesterase 6 holoenzyme Bovine rod phosphodiesterase 6 holoenzyme 0 1 2 3 Bos taurus Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha Bos taurus 0.099461789 1 LEVO MGEVTAEEVEKFLDSNVSFAKQYYNLRYRAKVISDLLGPREAAVDFSNYHALNSVEESEIIFDLLRDFQDNLQAEKCVFN VMKKLCFLLQADRMSLFMYRARNGIAELATRLFNVHKDAVLEECLVAPDSEIVFPLDMGVVGHVALSKKIVNVPNTEEDE HFCDFVDTLTEYQTKNILASPIMNGKDVVAIIMVVNKVDGPHFTENDEEILLKYLNFANLIMKVFHLSYLHNCETRRGQI LLWSGSKVFEELTDIERQFHKALYTVRAFLNCDRYSVGLLDMTKQKEFFDVWPVLMGEAPPYAGPRTPDGREINFYKVID YILHGKEDIKVIPNPPPDHWALVSGLPTYVAQNGLICNIMNAPSEDFFAFQKEPLDESGWMIKNVLSMPIVNKKEEIVGV ATFYNRKDGKPFDEMDETLMESLTQFLGWSVLNPDTYELMNKLENRKDIFQDMVKYHVKCDNEEIQTILKTREVYGKEPW ECEEEELAEILQGELPDADKYEINKFHFSDLPLTELELVKCGIQMYYELKVVDKFHIPQEALVRFMYSLSKGYRRITYHN WRHGFNVGQTMFSLLVTGKLKRYFTDLEALAMVTAAFCHDIDHRGTNNLYQMKSQNPLAKLHGSSILERHHLEFGKTLLR DESLNIFQNLNRRQHEHAIHMMDIAIIATDLALYFKKRTMFQKIVDQSKTYETQQEWTQYMMLDQTRKEIVMAMMMTACD LSAITKPWEVQSKVALLVAAEFWEQGDLERTVLQQNPIPMMDRNKADELPKLQVGFIDFVCTFVYKEFSRFHEEITPMLD GITNNRKEWKALADEYETKMKGLEEEKQKQQAANQAAAGSQHGGKQPGGGPASKSCCVQ P11541 3.1.4.35 Rod cGMP-specific 3',5'-cyclic phosphodiesterase subunit beta Bos taurus 0.098449648 1 LEVO MSLSEGQVHRFLDQNPGFADQYFGRKLSPEDVANACEDGCPEGCTSFRELCQVEESAALFELVQDMQENVNMERVVFKIL RRLCSILHADRCSLFMYRQRNGVAELATRLFSVQPDSVLEDCLVPPDSEIVFPLDIGVVGHVAQTKKMVNVQDVMECPHF SSFADELTDYVTRNILATPIMNGKDVVAVIMAVNKLDGPCFTSEDEDVFLKYLNFGTLNLKIYHLSYLHNCETRRGQVLL WSANKVFEELTDIERQFHKAFYTVRAYLNCDRYSVGLLDMTKEKEFFDVWPVLMGEAQAYSGPRTPDGREILFYKVIDYI LHGKEDIKVIPSPPADHWALASGLPTYVAESGFICNIMNAPADEMFNFQEGPLDDSGWIVKNVLSMPIVNKKEEIVGVAT FYNRKDGKPFDEQDEVLMESLTQFLGWSVLNTDTYDKMNKLENRKDIAQDMVLYHVRCDREEIQLILPTRERLGKEPADC EEDELGKILKEVLPGPAKFDIYEFHFSDLECTELELVKCGIQMYYELGVVRKFQIPQEVLVRFLFSVSKGYRRITYHNWR HGFNVAQTMFTLLMTGKLKSYYTDLEAFAMVTAGLCHDIDHRGTNNLYQMKSQNPLAKLHGSSILERHHLEFGKFLLSEE TLNIYQNLNRRQHEHVIHLMDIAIIATDLALYFKKRTMFQKIVDESKNYEDRKSWVEYLSLETTRKEIVMAMMMTACDLS AITKPWEVQSKVALLVAAEFWEQGDLERTVLDQQPIPMMDRNKAAELPKLQVGFIDFVCTFVYKEFSRFHEEILPMFDRL QNNRKEWKALADEYEAKVKALEEDQKKETTAKKVGTEICNGGPAPRSSTCRIL P23439 3.1.4.35 Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma Bos taurus 0.009684228999999999 2 LEVO MNLEPPKAEIRSATRVMGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHE LAQYGII P04972 3.1.4.35 CYCLIC GUANOSINE MONOPHOSPHATE 0.00034520499999999996 2 PCG ZINC ION 6.5409e-05 2 ZN MAGNESIUM ION 2.4305e-05 2 MG singleParticle particle 8.0 ETHANE FEI TALOS ARCTICA FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 1.2 2.4 79000.0 GATAN K3 (6k x 4k) 50.0 1 3.1 FSC 0.143 CUT-OFF 457179 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_42208.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 361.90002 361.90002 361.90002 90.0 90.0 90.0 X Y Z -0.5468725 1.8570539 -0.0015084504 0.045238804 1.034 1.034 1.034 0.444 AUTHOR emd_42208_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 361.90002 361.90002 361.90002 90.0 90.0 90.0 X Y Z -0.61705273 1.9658012 0.00003034929 0.053150814 1.034 1.034 1.034 AUTHOR emd_42208_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 350 350 350 0 0 0 350 350 350 361.90002 361.90002 361.90002 90.0 90.0 90.0 X Y Z -0.6539832 2.0023472 0.00002199872 0.053150408 1.034 1.034 1.034 AUTHOR