2024-06-12 REL RCSB RCSB RCSB 2023-09-07 2024-05-29 2024-05-29 2024-06-12 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35GM122519 United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) R35GM127034 United States Estonian Research Council PUTJD906 Estonia National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) U24GM129547 United States Cryo-EM structure of yeast SWR1C subunit Swc5 bound to the nucleosome, 3D class 1 Eek P Tan S Chromatin, Remodeler, Complex, Histone, GENE REGULATION Baier AS Gioacchini N Eek P Leith EM Tan S Peterson CL Dual engagement of the nucleosomal acidic patches is essential for deposition of histone H2A.Z by SWR1C. Elife US 13 2024 38809771 doi:10.7554/eLife.94869 2050-084X Baier AS Gioacchini N Eek P Leith EM Song T Peterson CL Dual engagement of the nucleosomal acidic patches is essential for deposition of histone H2A.Z by SWR1C Elife US 2024 doi:10.7554/eLife.94869.2 2050-084X EMD-41839 other EM volume
3D class 0
 EMD-41852 other EM volume
3D class 2
 EMD-41853 other EM volume
3D class 4
 Swc5 in complex with nucleosome core particle Swc5 in complex with nucleosome core particle 0 1 2 3 4 5 6 7 Xenopus laevis Histone H3.2 Xenopus laevis Escherichia coli LEVO ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA P84233 Histone H4 Xenopus laevis Escherichia coli LEVO MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG P62799 Histone H2A.1 Saccharomyces cerevisiae Escherichia coli LEVO SGGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKATKASQEL P04911 Histone H2B.1 Saccharomyces cerevisiae Escherichia coli LEVO SAKAEKKPASKAPAEKKPAAKKTSTSTDGKKRSKARKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQA P02293 SWR1-complex protein 5 Saccharomyces cerevisiae Escherichia coli LEVO RGSHHHHHHGSKTRRARQAEEEYAKTHKYESLTVESIPAKVNSIWEELQEASKNRLLSSSGKVGSVLDGSKEARSTTAAQQEDKILIERNYKFAGETVHEKKWVSRSSAEGQEYLNSLKFKQQAPAAPVQLEKAVRTKSNESRQHLRRPLKRPPLLEQIISGGLRPKLTTLEKSQLDWASYVDRAGLNDELVLHNKDGFLARQEFLQRVGSAEDERYKELRRQQLAQQLQQDNEAS P38326 Widom 601 forward DNA synthetic construct ATCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT DNA Widom 601 reverse DNA synthetic construct ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGAT DNA singleParticle particle 0.9 7.5 10.0 HEPES 2-[4-(2-hydroxyethyl)piperazin-1-yl]ethanesulfonic acid 50.0 NaCl sodium chloride 1.0 DTT dithiothreitol 0.1 PMSF phenylmethylsulfonyl fluoride Quantifoil R1.2/1.3 COPPER 300 CARBON HOLEY GLOW DISCHARGE AIR
15 mA with PELCO easiGlow
 ETHANE 100 277 FEI VITROBOT MARK IV
Chemically cross-linked with glutaraldehyde using the GraFix method.
 TFS KRIOS SPOT SCAN BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.8 2.8000000000000003 29000.0 GATAN K3 (6k x 4k) 1 13855 50.0 1 4564529 Ab-initio model
Created with CryoSPARC Ab-Initio Reconstruction into 3 classes.
 1 C1 3.1 FSC 0.143 CUT-OFF cryoSPARC v4.2.1 Non-uniform Refinement 62778 MAXIMUM LIKELIHOOD cryoSPARC v4.1.2 Ab-Initio Reconstruction MAXIMUM LIKELIHOOD cryoSPARC v4.2.1 Non-uniform Refinement 10 59000.0 cryoSPARC v4.2.0 3D Classification emd_41851.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 216 216 216 0 0 0 216 216 216 255.31201 255.31201 255.31201 90.0 90.0 90.0 X Y Z -0.3103105 0.6915839 0.000009148143 0.02346907 1.182 1.182 1.182 0.06 AUTHOR Main map, 3D class 1 emd_41851_msk_1.map emd_41851_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 216 216 216 0 0 0 216 216 216 255.31201 255.31201 255.31201 90.0 90.0 90.0 X Y Z -0.4201892 0.84566504 0.00086603046 0.042296257 1.182 1.182 1.182 AUTHOR Half map A emd_41851_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 216 216 216 0 0 0 216 216 216 255.31201 255.31201 255.31201 90.0 90.0 90.0 X Y Z -0.40696558 0.81389076 0.000876967 0.042152554 1.182 1.182 1.182 AUTHOR Half map B