2023-11-29 REL RCSB RCSB RCSB 2023-08-30 2023-11-22 2023-11-22 2023-11-29 National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM140733 United States In situ cryo-EM structure of bacteriophage P22 gp1:gp4:gp5:gp10:gp9 N-term complex in conformation 1 at 3.2A resolution Iglesias S Feng-Hou C Cingolani G phage, bacteriophage, tail spike protein, TSP, gene product 9 (gp9), Packaged DNA stabilization protein, gene product 10 (gp10), STRUCTURAL PROTEIN, VIRAL PROTEIN, head-to-tail protein, gene product 4 (gp4), Tail hub protein, gene product (1), Portal protein, Coat protein, Major capsid protein, gene product 5 (gp5) Iglesias SM Lokareddy RK Yang R Li F Yeggoni DP David Hou CF Leroux MN Cortines JR Leavitt JC Bird M Casjens SR White S Teschke CM Cingolani G Molecular Architecture of Salmonella Typhimurium Virus P22 Genome Ejection Machinery. J.Mol.Biol. UK 435 168365 168365 2023 37952769 doi:10.1016/j.jmb.2023.168365 1089-8638 0070 JMOBAK EMD-41792 other EM volume
In situ cryo-EM structure of bacteriophage P22 gp1:gp5:gp4: gp10: gp9 N-term complex in conformation 2 at 3.1A resolution
 8u10 FULLOVERLAP Salmonella phage P22 Salmonella phage P22 0 1 2 3 4 5 Salmonella phage P22 Salmonella enterica VIRION OTHER false false Portal protein Salmonella phage P22 0.082829375 12 LEVO MADNENRLESILSRFDADWTASDEARREAKNDLFFSRVSQWDDWLSQYTTLQYRGQFDVVRPVVRKLVSEMRQNPIDVLY RPKDGARPDAADVLMGMYRTDMRHNTAKIAVNIAVREQIEAGVGAWRLVTDYEDQSPTSNNQVIRREPIHSACSHVIWDS NSKLMDKSDARHCTVIHSMSQNGWEDFAEKYDLDADDIPSFQNPNDWVFPWLTQDTIQIAEFYEVVEKKETAFIYQDPVT GEPVSYFKRDIKDVIDDLADSGFIKIAERQIKRRRVYKSIITCTAVLKDKQLIAGEHIPIVPVFGEWGFVEDKEVYEGVV RLTKDGQRLRNMIMSFNADIVARTPKKKPFFWPEQIAGFEHMYDGNDDYPYYLLNRTDENSGDLPTQPLAYYENPEVPQA NAYMLEAATSAVKEVATLGVDTEAVNGGQVAFDTVNQLNMRADLETYVFQDNLATAMRRDGEIYQSIVNDIYDVPRNVTI TLEDGSEKDVQLMAEVVDLATGEKQVLNDIRGRYECYTDVGPSFQSMKQQNRAEILELLGKTPQGTPEYQLLLLQYFTLL DGKGVEMMRDYANKQLIQMGVKKPETPEEQQWLVEAQQAKQGQQDPAMVQAQGVLLQGQAELAKAQNQTLSLQIDAAKVE AQNQLNAARIAEIFNNMDLSKQSEFREFLKTVASFQQDRSEDARANAELLLKGDEQTHKQRMDIANILQSQRQNQPSGSV AETPQ P26744 Major capsid protein Salmonella phage P22 0.04679561299999999 10 LEVO MALNEGQIVTLAVDEIIETISAITPMAQKAKKYTPPAASMQRSSNTIWMPVEQESPTQEGWDLTDKATGLLELNVAVNMG EPDNDFFQLRADDLRDETAYRRRIQSAARKLANNVELKVANMAAEMGSLVITSPDAIGTNTADAWNFVADAEEIMFSREL NRDMGTSYFFNPQDYKKAGYDLTKRDIFGRIPEEAYRDGTIQRQVAGFDDVLRSPKLPVLTKSTATGITVSGAQSFKPVA WQLDNDGNKVNVDNRFATVTLSATTGMKRGDKISFAGVKFLGQMAKNVLAQDATFSVVRVVDGTHVEITPKPVALDDVSL SPEQRAYANVNTSLADAMAVNILNVKDARTNVFWADDAIRIVSQPIPANHELFAGMKTTSFSIPDVGLNGIFATQGDIST LSGLCRIALWYGVNATRPEAIGVGLPGQTA P26747 Packaged DNA stabilization protein gp10 Salmonella phage P22 0.05251201999999999 6 LEVO MPIQQLPMMKGMGKDFKNADYIDYLPVNMLATPKEILNSSGYLRSFPGITKRYDMNGVSRGVEYNTAQNAVYRVCGGKLY KGESEVGDVAGSGRVSMAHGRTSQAVGVNGQLVEYRYDGTVKTVSNWPADSGFTQYELGSVRDITRLRGRYAWSKDGTDS WFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTAGAALYVAQPSLMVQKGIAGTYCK TPFADSYAFISHPATGAPSVYIIGSGQASPIATASIEKIIRSYTAEEMATGVMETLRFDSHELLIIHLPRHVLVYDASSS QNGPQWCVLKTGLYDDVYRGVDFMYEGNQITCGDKSEAVVGQLQFDISSQYDKQQEHLLFTPLFKADNARCFDLEVESST GVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVLWKRVGRIRRLIGFKLRVITKSPVTLSGCQIRLE P26749 Tail spike protein Salmonella phage P22 0.071923523 18 LEVO MTDITANVVVSNPRPIFTESRSFKAVANGKIYIGQIDTDPVNPANQIPVYIENEDGSHVQITQPLIINAAGKIVYNGQLV KIVTVQGHSMAIYDANGSQVDYIANVLKYDPDQYSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVD FGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDY VKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGN YVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGAD TDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIID TNTKDFQANQIYISGACRVNGLRLIGIRSTDGQGLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAA IKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPY WENNSTSLKALVKKPNGELVRLTLATL P12528 Peptidoglycan hydrolase gp4 Salmonella phage P22 0.018044959 12 LEVO MQIKTKGDLVRAALRKLGVASDATLTDVEPQSMQDAVDDLEAMMAEWYQDGKGIITGYVFSDDENPPAEGDDHGLRSSAV SAVFHNLACRIAPDYALEATAKIIATAKYGKELLYKQTAISRAKRAPYPSRMPTGSGNSFANLNEWHYFPGEQNADSTTP HDEGNG P26746 singleParticle particle 7.5 ETHANE 100 277.15 FEI VITROBOT MARK IV TFS KRIOS OTHER OTHER FIELD EMISSION GUN 300 100.0 2.7 0.8 0.8 2.1 2.1 29000.0 29000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) 11520 8184 1.08 1 1 C1 3.2 FSC 0.143 CUT-OFF RELION 3.1.2 18053 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD 6 RELION 3.1.2 emd_41791.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 512.9599 512.9599 512.9599 90.0 90.0 90.0 Z Y X -14.9358635 20.218468000000001 -0.000000000003213 1.0 1.165818 1.165818 1.165818 3.5 AUTHOR FLEXIBLE FIT REAL emd_41791_msk_1.map emd_41791_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 512.9599 512.9599 512.9599 90.0 90.0 90.0 X Y Z -0.09339285 0.10952541 0.00019785602 0.012886373 1.165818 1.165818 1.165818 AUTHOR emd_41791_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 440 440 440 0 0 0 440 440 440 512.9599 512.9599 512.9599 90.0 90.0 90.0 X Y Z -0.090886794 0.11603512 0.00017081808 0.0129127065 1.165818 1.165818 1.165818 AUTHOR