<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-4150" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2017-08-02</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2016-10-17</deposition>
            <header_release>2016-11-23</header_release>
            <map_release>2016-11-30</map_release>
            <update>2017-08-02</update>
        </key_dates>
        <title>Structure of the baseplate of Siphophage J-1</title>
        <authors_list>
            <author>Cambillau C</author>
            <author>Spinelli S</author>
            <author>Dieterle ME</author>
            <author>Piuri M</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Dieterle ME</author>
                    <author order="2">Spinelli S</author>
                    <author order="3">Sadovskaya I</author>
                    <author order="4">Piuri M</author>
                    <author order="5">Cambillau C</author>
                    <title>Evolved distal tail carbohydrate binding modules of Lactobacillus phage J-1: a novel type of anti-receptor widespread among lactic acid bacteria phages.</title>
                    <journal_abbreviation>Mol. Microbiol.</journal_abbreviation>
                    <country>UK</country>
                    <volume>104</volume>
                    <first_page>608</first_page>
                    <last_page>620</last_page>
                    <year>2017</year>
                    <external_references type="PUBMED">28196397</external_references>
                    <external_references type="DOI">doi:10.1111/mmi.13649</external_references>
                    <external_references type="ISSN">1365-2958</external_references>
                    <external_references type="CSD">2007</external_references>
                    <external_references type="ASTM">MOMIEE</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-4150</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>virion's baseplate</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>virion's baseplate</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="1414736">Lactobacillus phage J-1</organism>
                </natural_source>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.</ph>
                    </buffer>
                    <staining>
                        <type>NEGATIVE</type>
                        <material>1% uranyl acetate</material>
                        <details>stained with 10 microL of 1% uranyl acetate for 30 sec</details>
                    </staining>
                    <details>The baseplate was boxed at the virion's tip</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI SPIRIT</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>LAB6</electron_source>
                    <acceleration_voltage units="kV">120</acceleration_voltage>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI EAGLE (2k x 2k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/&#8491;^2">2.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>865</number_selected>
                </particle_selection>
                <final_reconstruction>
                    <number_classes_used>3</number_classes_used>
                    <applied_symmetry>
                        <point_group>C6</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="&#8491;">20.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>Xmipp</name>
                            <version>3.1</version>
                        </software>
                    </software_list>
                    <number_images_used>865</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>OTHER</type>
                    <software_list>
                        <software>
                            <name>Xmipp</name>
                            <version>3.1</version>
                        </software>
                    </software_list>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>OTHER</type>
                    <software_list>
                        <software>
                            <name>Xmipp</name>
                            <version>3.1</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
                <final_three_d_classification>
                    <number_classes>3</number_classes>
                    <software_list>
                        <software>
                            <name>Xmipp</name>
                            <version>3.1</version>
                        </software>
                    </software_list>
                </final_three_d_classification>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="220">
        <file>emd_4150.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>38</col>
            <row>38</row>
            <sec>38</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>38</x>
            <y>38</y>
            <z>38</z>
        </spacing>
        <cell>
            <a units="&#8491;">183.54</a>
            <b units="&#8491;">183.54</b>
            <c units="&#8491;">183.54</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.25784045</minimum>
            <maximum>0.49923614</maximum>
            <average>-0.0017591693</average>
            <std>0.08419317</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">4.83</x>
            <y units="&#8491;">4.83</y>
            <z units="&#8491;">4.83</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.0305</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-4150::::</label>
        <annotation_details>This is the baseplate of siphophage J-1 (Lactobacillus casei BL23 phage) with a part of the tail</annotation_details>
    </map>
    <interpretation>
        <modelling_list>
            <modelling>
                <refinement_protocol>OTHER</refinement_protocol>
                <refinement_space>REAL</refinement_space>
            </modelling>
        </modelling_list>
    </interpretation>
</emd>