Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila

2024-10-23 REL RCSB RCSB RCSB 2023-07-14 2023-09-20 2023-09-20 2024-10-23 Canadian Institutes of Health Research (CIHR) Canada Natural Sciences and Engineering Research Council (NSERC, Canada) Canada Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila Ghanaeian AG Bui KH nexin-dynein regulatory complex, cilia, axoneme, dynein, STRUCTURAL PROTEIN Ghanaeian A Majhi S McCafferty CL Nami B Black CS Yang SK Legal T Papoulas O Janowska M Valente-Paterno M Marcotte EM Wloga D Bui KH Integrated modeling of the Nexin-dynein regulatory complex reveals its regulatory mechanism. Nat Commun UK 14 5741 5741 2023 37714832 doi:10.1038/s41467-023-41480-7 2041-1723 8th8 FULLOVERLAP Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila Linker domain of Nexin-dynein regulatory complex from Tetrahymena thermophila 0 14 3 4 5 6 7 9 10 11 12 13 1 2 15 Tetrahymena thermophila Dynein regulatory complex protein 1/2 N-terminal domain-containing protein Tetrahymena thermophila 0.098840125 1 LEVO MNPSQTQKGKIQIQVSRGSIDLLVRTMYEDINNIKLKNERFQKKKRAEDERRRRERYAEIQQEAIASGKKNAALEMKWAE LKELDECEELNREMQDQQQTFQQIIEGKENLRKEFEEELKRKDDEYVKMLKEQSNDIKDMISKMRSQFYKIRDANMQELE DIERHFEQERSNLLNEFKAKIQATFKKHLDLEEQYVKEHAKTEEEQTKNIEDLRIKGAKHYAELKITMETEIQDLEKCFE DMKALYQLITEKLDYSLKVLQEKFHENNSMCDELKRKENNFKNRLKQLTKDYKQYDKKFKLENKNLTQEYKRIIRQFKEL QKKFKHFEKADLDKYSEIQKMNEAEVKELKDKIIKCNITIHIQQLGMQWIPPQSEEEILAQQKLQLEQGGKAEEEEEREF EFCISEIKIGEICNIILEEADFLIDDKLREELEGSAEPEQIFQRLDCIKKCLYIDSEDEMNLFFRELITKCRVKSAEEIE EEARKQLLLLGLIKEAEENENPEGEEVQQQEGAQQKKKEEGNKKDDPKGKEGAKDSKENANPQGQNKSNQDERKKKKDGQ DDHAGQGQGQYDSNQGGMGENQEEGENAEGQENLEGEIEKEIDLENTQINLNEVVKFLQNWQANKDKRKEKLEKESSKKA VKQETEREKKERIAREGKKYWEKLTQVLPERTFRIWNVNFFKFSFEKQILLNQINKLRFWTDLCPNIMNFFWTDKNQSKK PVNCITKMKNQRIFQINTYKLIMNLLSALQDSLIQIKDKDDFIQTKISTNLFTFHNFQILLQIFIVNQSFLFIRLCQSYS KKIILLIKNINQKLFNLSNFKNQFSF Q229S1 Coiled-coil protein, putative Tetrahymena thermophila 0.060596347999999994 1 LEVO MALLGKTLKGRSTRPGGIPQKRNIKWRQLAKNQEEFDQLKQLAKMKREGLKARIKDEQKVVTFNKKKLITYWRKIMRIAK TEQLKNEIDIYSQNNQRELDSKEAFIQMLDKNLDEAEDQFQIALRNHLIHIENLMQLQEARMRGLAEEFNRDVNILETEF DLEREEMVKTHKTQLKELEDMIETVKEEDKKKTEEAQNEFSQFKEETKNKNLEETNVMKIILETKQTKYYTELEQMNSKF QSDTSNKVKDHQFYHAHNKNRKQEIDRYLRTISSKKAKIDLMKLKILQHCKEFNARNSALKKEKENISRNYHELKLKMQK FREEESRRLKELSNNSRNAVLKLREYCALGEKILKTAELCRRLETEKEKVLPFYESSVDEDQIPEQLKNEFEHLKKEDAE EYAYLNNFYKRYNKVLLDKLAIEKQKENLQRDNQLLKSLLKQYLDGISLNDDVLKNENNPLLVVNHKFNLGKMPVEKIEN KTVIEGVFEVRNTSHQLQGQRAPPFQ Q24DJ0 LRRC48 protein Tetrahymena thermophila 0.068009617 1 LEVO MSNYISNYVQSTIVTKTVQNKDKKTGKNSVDPRVINEQLILDAVKQFNQENNKITTENIILQQLRQLQLSFKNILKIQHL QGLERLEKLQLDNNIIEKIENIDHLVNLKWLDLSFNCIKKIEGLDKLKELTDLSLFNNYIEKIEGLHNNTKLNVFSIGNN RLKSYEEITLYFGYKPRGEEGTNDRPEFKRLQVLNVSGNPFTKDKENEYKNHIICAIPNLKYLDYVFIDEGDRQLIRQDE QISNSYNFTTTDYYQQMQAQEQKEEMDRQTLKKKKDARMDILDNLKDEYLKIEDLQRVKIIKPNQINEEIEKYCGKINDH VVEMQAAVIQKHQLILQEMSKTEVSYKEQEALHEKETLQILKEFEHEKKVEFRNWEKEAANGDAKKEESRLKTLLQKTTS LKNKLMDIEIQLVEELEAIFTDYDTKKKETAWKDIEEIIVLGQKKIEEENVKFYSNLNVIKNKEEANYNSTQQQQLEEEN NEEDDEKASLLENKEQLAQMIGNIKETLIDSHTKIILSAQMELQKDLAEYAKQQKNKMYERNRKNISQIIAQIDAYQTEI NEKLKQGDDESDHEN I7MG46 Growth-arrest-specific microtubule-binding protein Tetrahymena thermophila 0.056190844 1 LEVO MSKAAKAKKNVPVVSKLEADARKAAEGVNDNESEEFKKAMRKEARALVEQFNEEKKLLAFYQQERQKINYNWIIAKKELE DKKSELINKEREIQDLQENHFMTLNVYKQKIKHLLFQNQDQQSELKKDVEVTLKQLEDQHRIKSRELKTDVRSLKVTKKE QEISQQDYLFALKSEHDKQMTLMRQDYERQVNDIKRKYDLKMQNLTKEMEEARAAMIKQLEDNKNQKIAEIIKEHTQKYN DIKNYYSEITATNLDYRKTLKNEIKELQTKDEEYKKTLQQTEKGYKELNEPLQALGIEIIQLKKQDEEQEAIIKEKEELK QKIDNQERLFRKLEYEYEVKLQQFQYLERERNALYAKFNQTVFEIHQKSGLENLILEKKVTNLREDLEIKDLQIHQVLTA ANIDPNSVGSINKSLEEVESLKNELISELQAQLKQIRKAHSHMVKAYEGKLSEFVIPVEELGFDPLVPTNTD I7LT80 Growth-arrest-specific microtubule-binding protein Tetrahymena thermophila 0.055393203 1 LEVO MPPKKAKGKKKKEEEPDDEYKSMTGADLTQTLEKLKERVNEMRTNRNYIQMDRDMVENFYHNTLKEISEVKTKISNKETE AEEKESKHRIDVKVFLQKVKHLEYEQEKSNLNIEDDGKKAKEKEDAYFEDITKNMKQLKTQLKSEYLEKEKANIQQVQEE KKDHQSLLKIQQKKFDELINNLIIKYEERLAKLKEDLELKLKVEIHELEERKNLHINELMNNHEKAFAELKKYYNDITAE NLNLIKAHKEKIAQIYANIQLNTKNVADNQAKNEQLKEPLAKHREIRNKLKEDLKQFAKHKMSLQNLKSKAITLKDKITK LERDGKDLDEKYEKVVREKQELEKKFEDITQEVKKNADLNNNVLSNRLQILLKEYNNKEEELRTIIDNAGLDHNLHEQLK QRVQQSIEAKNTLIKNLKYSIHHATKAYNDAIRVYEAKLVEFGIPIEELGFQPLETITSSMPAGLVSS Q23YW7 Flagellar associated protein Tetrahymena thermophila 0.052938457 1 LEVO MLAKKLALARSQGKPDPFKKDEFPLLQHIAVEVVSQNYILYPDLKGVPENVRDTIISKITTDLDILTMAPNIDQESFWQR ACKNRWEKSQKSINIEEHGRSWKVAYLERYMEEFLTNIQNADDPNKKQILQAELKAAASWIHTLNLQNINQNIDIDFICK YLPLLTSLTLTYGTKYSGMDYNKQSVGMKLSEAANLGEAIKNCYSLLSLNISANMIDDDLLRFIMAGVNMNISLIELNLS HNKIEDQGARRIAKFLMRNEILLYLNLGNNLIGYEGSRYLAQALKVNKNLQSLNLKLNNLGDKAGKKLFQDLMLNKTLLE LDVSGNQFEFETALKLSDYVADSMCGLKVLNIANNDFNDSCYENLKTGFTKNYSLAKLDLRGNKFSKTQEEKEQELKDPF RMFNLSQTEKELTQIIIRHDLTAQKIQFFSESDLDKIKQLKELQGAKQEPEKVIQQDQNKE Q24C31 Kinase domain protein Tetrahymena thermophila 0.039706977 1 LEVO MGDKKGKKKGGGEEDESTLQLSRQYKKKCELNGINPSKLFKEKLDFAVEEDENIEKIHLWEELGPVGVRSIMDSLTEIPY LHTKSIRLWKVKAQDEGTRTICNYMEKSKTIEYLDLMDNQVGSLGCEFLGRVLHPQIEIPLLKLKLDHNEFGTEGLMQLA AGLCMNSVLEKLSLNYCAITAEGSKYIQQILSFVNTNLKKLKMKGNLLKNEGVHQLFRAFKVNKTLEKVDLSDNQFDTTL GDDQDPEANPNFFETNKDAIEHNKQIIENICEVLKAADTLLYYDFRFNNISKTDAKAIIDCLEANKNIYYMELSEHIPKD LIERKKGLMKKRKPKKKKKKKAKKK Q24CL2 Coiled-coil lobo-like protein, putative Tetrahymena thermophila 0.10122532799999999 1 LEVO MDHNEGGYSHHQIEGQEGQQQQAPVGGGGEDIFQVLENITQVQNEKLKRCQEFKEQENIPRQYIENSPKEELVLEHVIQF KRQFQYQLYYEDKRDLFLYPKNECDVYKFICTTIRPTKLGFLELYDYQQCSKYLSEFVQYEELDPPNEFPLVIPSPTNVA VWQKGDCFDMSILLCSLLIGVGYDAYCVYGKAPREITTRNESLMECLFLEKGKYIEENDKKPKQTLEQNENALLKKPIAH SKWDQTQETKAREAEEEKRRIALTINDDEPDELLEDPYQGQRVHCWVLLRSGKRDVQQNIFIEPSTGRMYSPSTCPYECV DAVFNNLNFWINMKPECEVKNLNFEEMDSSLNWEYVMLDTLLFNKGNGNDEEGNENIDDPLNKQAQRDPEQEQLQDIAQL LDMPPPWPPKIYIDKEKFLMGTPLGEGTVYYNKVKVDNYAPYSQPDGLVQKITIFQDYKRLKVKEYRYFYKHRSDKLSIR RRYPFEFKTIEEYEPQKYENKTIPQALQQWRQVIQIDRHLRIIKYYHNRNHDGLIERVEQIGEKTMMFYQNRDDRVIYRS IRFDNKRAPSSQNNDKVFQDNHVGDVQITKMTQKFEKNPHYPANEQIQKMVIDLIKDKVIVYYHMNDGEITPIVKIYPRD SMHGFAKLNEPGGDNKIDDPLVQLENTKMVNLEKDCLNQLKQQEKIARDDEKTIREGEIRLEKTLYDKARDRFKESSKKN DDDLAKDAAASDYLYPYLEKRKLLGVSEINAQVAMEIKNEVMQKLKERLLSRAEIIQRRLEEQRQVLEQKEAQVAKRQEI DPKQEEEIRDINFKIDILEQRALRFESMALQKYEEMDNRLNKDARLAALHRK I7MLZ4 EF-hand calcium-binding domain protein Tetrahymena thermophila 0.022062065999999998 2 LEVO MYDPNTSQTEKQKQEEFLKLKIQEAFNLFVKDKKGIVDKREIPYIMRYLGQFPSEAQVRDAILPEIEEDEPSEFIKYSKF EPYMLKVLKEREYEPDDPEALLAAFKLLDQEGKGYIEIDMMKTFLEKQGIEFREQETKSFIEFATNKDPNATVIYYEDYI SRLQAFTDKHIESVMKGYNNFQVKK W7WX86 Dynein regulatory complex protein 9 Tetrahymena thermophila 0.044990226999999994 1 LEVO MNQIDAHKLTIILRDATERLTFLDTINRQDDLSSELAGYEISKLLKKQKNLENQYADLVQLRTSLTGIQNKKNLIETQTK IVDVAQNLKESTKKLCRLFKENPDLESDALKVKKDRIQFMAVIEQLIQMVQNNSLTKFQSMTTLELEDQDRLRKLIFREK ELYQEIKKLQFDRNQENKEYDNEQKDTNLKIQNLKERLLYKKARAQLKNQYKEKEARAEEGTQQRMYEFEQKQLKEKINN LKQKTDTENMVHEQLRNFLIEKEDQIKQKSDEWAKKVETCREQLQEEIDRLTVEKEKKQEELRELRERDQKEQEEKDRRE RQELEEADRKQQEELDQIRLDNAIKLIQIEYQEWKDAGGGKKKRKKGKKKKK Q23S05 Dynein regulatory complex protein 10 Tetrahymena thermophila 0.051315023 1 LEVO MQNLSKMQSRLHPRPEGEGGGGGGRTKEKGKSLQETHKEMLKNIESTNIGKPTIVEAQRILKIIDNLSTNLTIFIYLDSE LISKFLDVAKHSKLSKDLVSKLSQRCLDLLKSQAEIEAKFKPYASLLDQSNKEAEDVEEEKMIDAERLRMQLENNFKDLV RHLRNSPEDFEIIKSMKTNVNPDLNDLVHCIHCQKVIMLKKLSTASEEDENHKAQLRDLEEKIEELEKKKNKIQEDLTKL KEHRQKFSKEKKEELEKLKNEIAEVKAEKEKKASQLKNELDNRLKQLERDHLAKKDKLDKELQKLEDDFAKLKQDHANDE TKLKTNKRQQQNSLADNIESYDALMKDQHQKKQEIEEELAKIIEEVDTLKQLFKEIDEEKQRERELEEEFRLKKEQWEIQ ERRKKEAARCILHFLMARKEKSKKKKKKKGKKKK A4VD15 AAA family ATPase CDC48 subfamily protein Tetrahymena thermophila 0.101144125 1 LEVO MSNMMYNMKWQEAINDLMEQVTLEYLPLEQNEQQLGMKYKRDSSEWFHFWATLYIKYIDIYKKLEDCYDQLVHPQKRVLL KEMLENVIVRLCETKSQVVKYNTQYDATYKSDYPNLDELVMDLKLTPDCLDIPIPRYFREEDKKRLDERNQILDALLLEY TDTKEPQEEQYEDQNTLQADMDTAIRIIQRYERGRQGIERANLAKILKKEEEKKLERQKKLAEGTEIGEETEKDDAALVI KKYWRGYKSRKLVQDIREEELLFLGMKKVVEDPTLPESQYKQAQNKRQKMKYIQEEHEQEFNDEIENLKRLVKGNEGPDI LDKMRAERREWIMRELEKNEFKEAPQDPSEFYNQQVMDPEQQAAEAAKAAEEAKKKGAAKKDDKKKKGKPSELDEFLENN KPTGPSPIVLKLQEQIEKHSGEWSKRDETNNFEQKHETELAKMLIKPVVEEQIKQQVDEMIAEELDIVRLRYDIKKKKQK KPPRPRNKGKNKKKFPGDSSNKGRDPKDILAGLVEKRVAKKLIPASLMDLKGEQNVLGKIQEIQADENLKKTEALTDAKL KKAQLEEPSTKMPDPSIAQIRQIIAEYIAFPLGSKYAKEKLDKMNYFFFMGPRGSGKTLAVRALAHECNAIVLDISPSNI DGQYTDKKQIDGMINSAFKVAKEFQPAIIYCEDFEYIFGQAKKKKSQVNPLFAKMKKPLMDFKKGKFFEPEDRVVFIGST NRPWDCSQKEIKSFFDKKIYFPFPNYGTRMLLFKTFLEQKKVPLPDNFPINTIAHITEGWSAGSFKMAIDRVFTERRLQK INEEQIKLSEFIGPLSNVPFTSKEEFKEFKKFNQVVTGLQANYEAKKAPADDQKGDKNKKKK I7LWE3 DUF4201 domain-containing protein Tetrahymena thermophila 0.09454088299999999 1 LEVO MASEDGEMPSQFEGIDPEQLTESQMQQYMMEMQRQGLLDSNMEGGQYEEGYEEGQEGEGYGEEYGDQDYDGNQNEYDSQQ DSQQQGHDQVNEMHQDRYDRRVNSEISGNYEADDETLRKIRRDLLDNINLERRHRDLQPVYIDLTTNNISQYYSEYLVNN EHNQDFYENAKVRYNNLGECELCHITAKFEPDADITKEYIYDYFMEIGYLFLESEEEKRIILNPANNHIGIGVFFDEIQI VVVLILSEKVLCIQKISQPEQNKIEIRGKMLDENFGIYAIRIMNVDDQKKDIKGVGPEFIEYTRSTQEWMASFELELYNQ DRMAIEYYTRVSPDSIPYKKKQSKNEKLTYKHLQLRLRTPFQIYPDPKYAAEDEKERIRKEQEILAHEEQERKEREENDA KRLKQSRKDYGDGQYDDDEHGQDDFNSQSDISDKDKHHDSMHAEQEQNQQAAQQQQDTISNKEIRQELEMAITEAQRQHD EFMLQNHKLQEEIKLLKNKNDGFVDRSNETAMNEHKYLNTLAHVHQIRLDLKQTQTRYNQMSQELQKKLEQKQKKCNEIK YAFLELKREVAKKAANSRTDKPIPEQQINEWEKAELQKSKELQELRLQILRLRNAYVKNQKILKKKEELAEGLHLIDFEQ LKIENQTLNEKIEERNEELHKLKKKNTTTIQILTHTREKLGFVQGENGELNSQNVRKDQELDDMRKQLTQQKKTKDKLRS VNLTLKQQTGIVNSEELGQDYRDLRTRVSKLEEEKKRLEQKLRSMHEAIKTANQISTQNMQSQNNSLKKPYQPY I7M6D6 Calmodulin 7-2 Tetrahymena thermophila 0.023862807 2 LEVO MDNTGKLEKQLVTLNDGLPKKPAKEIIEELKHHLYQDFQKFFSEEKKQQYQNNFALFDRDNDKYINLSELKELLTSVNIT FPDDELEELYNEFCLTSPEADGINEDAVFIIVSKKIRDNDKDEQLTQAFKLVEKAVNDELAKTPNETKEQEGYIRVEQFK ELLMTLGNRWSEEQANEFLKDINPKSDERINYLDVVKKLMKR I7MDA9 Coiled-coil domain-containing protein 153 Tetrahymena thermophila 0.022170178 2 LEVO MSKKSGKGKGKNDGDELGAEKEQVLRTKVESLIQRLGHEQERADRAKAAENELRARLFDLDKDFKNEKDRLFSITSDMTR QYKQMQDELLNQVNDLNKTVIEKDEEIKKKDQQIQDMTKDYEYKLKKKDDEIQDLKRKIEEMSAEFAKMLKDTLDKMQER IEMVQWDSDTDPQMMKRLKDMTGLSNN Q22RH5 singleParticle cell 7.4 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 3.0 GATAN K3 (6k x 4k) 45.0 1 EMD-8537 7.4 OTHER 211502 NOT APPLICABLE NOT APPLICABLE emd_41251.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 258 211 208 -1 -43 -13 258 211 208 706.92 578.14 569.92 90.0 90.0 90.0 X Y Z -0.09863708 0.17370053 0.00037829683 0.006335534 2.74 2.74 2.74 0.0217 EMDB ::::EMDATABANK.org::::EMD-41251:::: Primary map emd_41251_msk_1.map emd_41251_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 150 150 150 0 0 0 150 150 150 411.0 411.0 411.0 90.0 90.0 90.0 X Y Z -0.050652977 0.12819728 0.0025242495 0.007008194 2.74 2.74 2.74 EMDB ::::EMDATABANK.org::::EMD-41251:::: half map 1 emd_41251_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 150 150 150 0 0 0 150 150 150 411.0 411.0 411.0 90.0 90.0 90.0 X Y Z -0.046081744 0.1222641 0.0025750324 0.007003126 2.74 2.74 2.74 EMDB ::::EMDATABANK.org::::EMD-41251:::: half map 2