2024-10-09 REL RCSB RCSB RCSB 2023-05-17 2024-09-11 2024-09-11 2024-10-09 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) P01 AI110657 United States BG505 GT1.1 SOSIP in complex with NHP Fabs 12C11 and RM20A3 Zhang S Torres JL Ozorowski G Ward AB germline targeting, HIV-1 Env, neutralizing antibody, non-human primate antibody, CD4 binding site, VIRAL PROTEIN Caniels TG Medina-Ramirez M Zhang S Kratochvil S Xian Y Koo JH Derking R Samsel J van Schooten J Pecetta S Lamperti E Yuan M Carrasco MR Del Moral Sanchez I Allen JD Bouhuijs JH Yasmeen A Ketas TJ Snitselaar JL Bijl TPL Martin IC Torres JL Cupo A Shirreff L Rogers K Mason RD Roederer M Greene KM Gao H Silva CM Baken IJL Tian M Alt FW Pulendran B Seaman MS Crispin M van Gils MJ Montefiori DC McDermott AB Villinger FJ Koup RA Moore JP Klasse PJ Ozorowski G Batista FD Wilson IA Ward AB Sanders RW Germline-targeting HIV vaccination induces neutralizing antibodies to the CD4 binding site. Sci Immunol US 9 eadk9550 eadk9550 2024 39213338 doi:10.1126/sciimmunol.adk9550 2470-9468 8sw3 FULLOVERLAP BG505 GT1.1 SOSIP in complex with 12C11 Fab and RM20A3 Fab BG505 GT1.1 SOSIP in complex with 12C11 Fab and RM20A3 Fab 0 1 2 3 4 5 6 Macaca 0.72 BG505 GT1.1 SOSIP gp120 Human immunodeficiency virus 1 0.057275480000000004 3 Homo sapiens LEVO MDAMKRGLCCVLLLCGAVFVSPSQEIHARFRRGARAENLWVTVYYGVPVWKDAETTLFCASDAKAYETKKHNVWATHACV PTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTT ELRDKRQKVHALFYKLDIVPINENQNTSYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSV STVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSKDIRNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDII GDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCDTSGLFNSTWISNTSVQG SNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTDSTTETFRPSGGDMRDNWRSELY KYKVVKIEPLGVAPTRCKRRVVGRRRRRR RM20A3 heavy chain variable region Macaca 0.013511111000000001 3 Homo sapiens LEVO EVQLVETGGGLVQPGGSLKLSCRASGYTFSSFAMSWVRQAPGKGLEWVSLINDRGGLTFYVDSVKGRFTISRDNSKNTLS LQMHSLRDGDTAVYYCATGGMSSALQSSKYYFDFWGQGALVTVSS RM20A3 light chain variable region Macaca 0.011755821 3 Homo sapiens LEVO QSALTQPPSVSGSPGQSVTISCTGTSSDIGSYNYVSWYQQHPGKAPKLMIYDVTQRPSGVSDRFSGSKSGNTASLTISGL QADDEADYYCSAYAGRQTFYIFGGGTRLTVL Envelope glycoprotein gp41 Human immunodeficiency virus 1 0.017146481999999998 3 Homo sapiens LEVO AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQ LLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD Q2N0S6 12C11 heavy chain variable region Macaca 0.014244821999999999 3 Homo sapiens LEVO QVQLQESGPGLVKPSETLSLTCAVSGNPVTAGFDWTWIRQSPGKGLEWIGHIYGASGSTNYNPSLESRVTISRDASRNQF SLKLTTVTAADTAVYYCARRGGDHRYSRMLTFTFTNFDFWGQGVLVTVSS 12C11 light chain variable region Macaca 0.011475475 3 Homo sapiens LEVO QSVLTQPPSVSEAARKSVSISCSGSDSNIGSNSVSWFQQFPGTAPKLLIHFNNQRASGVSDRFSGSKSGTSASLAISGLQ TDDEADYYCAAWDDSLTAAVFGTGTRLTVL 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 42 NAG singleParticle particle 8 7.4 50.0 Tris 150.0 NaCl Sodium chloride 0.06 n-Dodecyl-B-D-Maltopyranoside
Detergent added shortly before freezing
 Quantifoil R1.2/1.3 COPPER 300 CARBON HOLEY PLASMA CLEANING ETHANE 100 277 FEI VITROBOT MARK IV TFS GLACIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 0.7000000000000001 1.5 190000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON IV (4k x 4k) 5627 50.3 1
cryoSPARC ab initio
 C3 2.8 FSC 0.143 CUT-OFF cryoSPARC 4 Non-uniform refinement 456166 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_40796.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 388 388 388 0 0 0 388 388 388 391.49197 391.49197 391.49197 90.0 90.0 90.0 X Y Z -1.63977 2.6837301 -0.00029284353 0.041955277 1.009 1.009 1.009 0.2 AUTHOR Sharpened map emd_40796_msk_1.map emd_40796_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 388 388 388 0 0 0 388 388 388 391.49197 391.49197 391.49197 90.0 90.0 90.0 X Y Z -0.23964235 0.54901594 0.00022502946 0.015803313 1.009 1.009 1.009 AUTHOR half map B emd_40796_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 388 388 388 0 0 0 388 388 388 391.49197 391.49197 391.49197 90.0 90.0 90.0 X Y Z -0.2315097 0.570687 0.00022752375 0.015823223 1.009 1.009 1.009 AUTHOR half map A