<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-4072" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2017-08-02</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2016-07-26</deposition>
            <header_release>2016-10-05</header_release>
            <map_release>2016-10-05</map_release>
            <update>2017-08-02</update>
        </key_dates>
        <title>Cryo-EM 3D reconstruction of rings formed by the extracellular domain of SpoIIIAG from Bacillus subtilis</title>
        <authors_list>
            <author>Rodrigues C</author>
            <author>Henry X</author>
            <author>Neumann E</author>
            <author>Schoehn G</author>
            <author>Rudner D</author>
            <author>Morlot C</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Rodrigues CD</author>
                    <author order="2">Henry X</author>
                    <author order="3">Neumann E</author>
                    <author order="4">Kurauskas V</author>
                    <author order="5">Bellard L</author>
                    <author order="6">Fichou Y</author>
                    <author order="7">Schanda P</author>
                    <author order="8">Schoehn G</author>
                    <author order="9">Rudner DZ</author>
                    <author order="10">Morlot C</author>
                    <title>A ring-shaped conduit connects the mother cell and forespore during sporulation in Bacillus subtilis.</title>
                    <journal_abbreviation>Proc.Natl.Acad.Sci.USA</journal_abbreviation>
                    <country>US</country>
                    <volume>113</volume>
                    <first_page>11585</first_page>
                    <last_page>11590</last_page>
                    <year>2016</year>
                    <external_references type="PUBMED">27681621</external_references>
                    <external_references type="DOI">doi:10.1073/pnas.1609604113</external_references>
                    <external_references type="ISSN">1091-6490</external_references>
                    <external_references type="CSD">0040</external_references>
                    <external_references type="ASTM">PNASA6</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-4072</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Oligomeric rings formed by the D1+D2 extracellular domains of SpoIIIAG from Bacillus subtilis</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Oligomeric rings formed by the D1+D2 extracellular domains of SpoIIIAG from Bacillus subtilis</name>
                <parent>0</parent>
                <macromolecule_list>
                    <macromolecule>
                        <macromolecule_id>1</macromolecule_id>
                    </macromolecule>
                </macromolecule_list>
                <natural_source database="NCBI">
                    <organism ncbi="224308">Bacillus subtilis subsp. subtilis str. 168</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                    <recombinant_strain>ROSETTA pLysS RARE</recombinant_strain>
                    <recombinant_plasmid>pCR094</recombinant_plasmid>
                </recombinant_expression>
                <molecular_weight>
                    <experimental units="MDa">0.019</experimental>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
        <macromolecule_list>
            <protein_or_peptide macromolecule_id="1">
                <name>SpoIIIAG</name>
                <enantiomer>LEVO</enantiomer>
                <sequence>
                    <string>SSPEKTENAK
TITAVSSQHSADSKEKTAEVFKASKSDKPKDSIDDYEKEYENQLKEILETIIGVDDVSVV
VNVDATSLKVYEKNKSNKNTTTEETDKEGGKRSVTDQSSEEEIVMIKNGDKETPVVVQTK
KPDIRGVLVVAQGVDNVQIKQTIIEAVTRVLDVPSHRVAVAPKKIKEDS</string>
                </sequence>
            </protein_or_peptide>
        </macromolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.1</concentration>
                    <buffer>
                        <ph>7.5</ph>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/1</model>
                        <material>COPPER</material>
                        <mesh>400</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <instrument>FEI VITROBOT MARK IV</instrument>
                        <details />
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI POLARA 300</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">300</acceleration_voltage>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>KODAK SO-163 FILM</film_or_detector_model>
                            <average_electron_dose_per_image units="e/&#8491;^2">15.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>CTFFIND</name>
                        </software>
                    </software_list>
                </ctf_correction>
                <startup_model type_of_model="OTHER">
                    <details>The initial model was generated by back-projecting a side view and imposing C24 symmetry (as determined by ultracentrifugation experiments)</details>
                </startup_model>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>C24</point_group>
                    </applied_symmetry>
                    <algorithm>BACK PROJECTION</algorithm>
                    <resolution res_type="BY AUTHOR" units="&#8491;">35.0</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <number_images_used>6125</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing />
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing />
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="8389">
        <file>emd_4072.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>128</col>
            <row>128</row>
            <sec>128</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>128</x>
            <y>128</y>
            <z>128</z>
        </spacing>
        <cell>
            <a units="&#8491;">304.64</a>
            <b units="&#8491;">304.64</b>
            <c units="&#8491;">304.64</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>0.</minimum>
            <maximum>0.96044</maximum>
            <average>0.023103384</average>
            <std>0.102511354</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">2.38</x>
            <y units="&#8491;">2.38</y>
            <z units="&#8491;">2.38</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.253</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::D_1200000934::::</label>
        <annotation_details>Cryo-EM 3D reconstruction of SpoIIIAG rings from Bacillus subtilis.</annotation_details>
    </map>
</emd>