2024-06-19 REL RCSB RCSB RCSB 2023-03-12 2023-04-12 2023-04-12 2024-06-19 National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R01AI088025-13 United States Srinivas P Conn GL Dunham CM ribosome, 30S, RmtC, 16S rRNA methyltransferase Srinivas P Nosrati M Zelinskaya N Dey D Comstock LR Dunham CM Conn GL Biorxiv US 2023 36993224 doi:10.1101/2023.03.13.532395 2692-8205 8ghu FULLOVERLAP 16S rRNA methyltransferase RmtC bound to the 30S ribosomal subunit 16S rRNA methyltransferase RmtC bound to the 30S ribosomal subunit 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 Escherichia coli 16S rRNA (guanine(1405)-N(7))-methyltransferase 1 1 Proteus mirabilis 16S rRNA (guanine(1405)-N(7))-methyltransferase Escherichia coli 0.032146834 1 Escherichia coli LEVO MKTNDNYIEEVTAKVLTSGKYSTLYPPTVRRVTERLFDRYPPKQLEKEVRKKLHQAYGAYIGGIDGKRLEKKIEKIIHEI PNPTTDEATRTEWEKEICLKILNLHTSTNERTVAYDELYQKIFEVTGVPTSITDAGCALNPFSFPFFTEAGMLGQYIGFD LDKGMIEAIEHSLRTLNAPEGIVVKQGDILSDPSGESDLLLMFKLYTLLDRQEEASGLKILQEWKYKNAVISFPIKTISG RDVGMEENYTVKFENDLVGSDLRIMQKLKLGNEMYFIVSRL G4WZ44 16S rRNA Escherichia coli 0.49696656199999995 1 AAUUGAAGAGUUUGAUCAUGGCUCAGAUUGAACGCUGGCGGCAGGCCUAACACAUGCAAGUCGAACGGUAACAGGAAGAA GCUUGCUUCUUUGCUGACGAGUGGCGGACGGGUGAGUAAUGUCUGGGAAACUGCCUGAUGGAGGGGGAUAACUACUGGAA ACGGUAGCUAAUACCGCAUAACGUCGCAAGACCAAAGAGGGGGACCUUCGGGCCUCUUGCCAUCGGAUGUGCCCAGAUGG GAUUAGCUAGUAGGUGGGGUAACGGCUCACCUAGGCGACGAUCCCUAGCUGGUCUGAGAGGAUGACCAGCCACACUGGAA CUGAGACACGGUCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGCAAGCCUGAUGCAGCCAUGCC GCGUGUAUGAAGAAGGCCUUCGGGUUGUAAAGUACUUUCAGCGGGGAGGAAGGGAGUAAAGUUAAUACCUUUGCUCAUUG ACGUUACCCGCAGAAGAAGCACCGGCUAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGUGCAAGCGUUAAUCGGAAU UACUGGGCGUAAAGCGCACGCAGGCGGUUUGUUAAGUCAGAUGUGAAAUCCCCGGGCUCAACCUGGGAACUGCAUCUGAU ACUGGCAAGCUUGAGUCUCGUAGAGGGGGGUAGAAUUCCAGGUGUAGCGGUGAAAUGCGUAGAGAUCUGGAGGAAUACCG GUGGCGAAGGCGGCCCCCUGGACGAAGACUGACGCUCAGGUGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGU AGUCCACGCCGUAAACGAUGUCGACUUGGAGGUUGUGCCCUUGAGGCGUGGCUUCCGGAGCUAACGCGUUAAGUCGACCG CCUGGGGAGUACGGCCGCAAGGUUAAAACUCAAAUGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUU CGAUGCAACGCGAAGAACCUUACCUGGUCUUGACAUCCACGGAAGUUUUCAGAGAUGAGAAUGUGCCUUCGGGAACCGUG AGACAGGUGCUGCAUGGCUGUCGUCAGCUCGUGUUGUGAAAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCCU UUGUUGCCAGCGGUCCGGCCGGGAACUCAAAGGAGACUGCCAGUGAUAAACUGGAGGAAGGUGGGGAUGACGUCAAGUCA UCAUGGCCCUUACGACCAGGGCUACACACGUGCUACAAUGGCGCAUACAAAGAGAAGCGACCUCGCGAGAGCAAGCGGAC CUCAUAAAGUGCGUCGUAGUCCGGAUUGGAGUCUGCAACUCGACUCCAUGAAGUCGGAAUCGCUAGUAAUCGUGGAUCAG AAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACAGCCC(ZIV)UCACACCAUGGGAGUGGGUUGCAAAAGAAGUA GGUAGCUUAACCUUCGGGAGGGCGCUUACCACUUUGUGAUUCAUGACUGGGGUGAAGUCGUAACAAGGUAACCGUAGGGG AACCUGCGGUUGGAUC 30S ribosomal protein S3 Escherichia coli 0.023078784999999997 1 LEVO GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKG EDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAE IARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEI V0Y888 30S ribosomal protein S4 Escherichia coli 0.023383002 1 LEVO ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAAR LKGNTGENLLALLEGRLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALEL AEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK C3SR62 30S ribosomal protein S5 Escherichia coli 0.015804282 1 LEVO ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVH TGSRVFMQPASEGTGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGK F4TL26 30S ribosomal protein S6, non-modified isoform Escherichia coli 0.011669370999999998 1 LEVO MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGRRQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRF NDAVIRSMVMRTKHAVTEAS P02358 30S ribosomal protein S7 Escherichia coli 0.016861523 1 LEVO PRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVG GSTYQVPVEVRPVRRNALAMRWIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFA P02359 30S ribosomal protein S8 Escherichia coli 0.014015361 1 LEVO SMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEGFIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRP GLRIYKRKDELPKVMAGLGIAVVSTSKGVMTDRAARQAGLGGEIICYVA A0A828U358 30S ribosomal protein S12 Escherichia coli 0.013636961 1 LEVO ATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKKPNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVIL IRGGRVKDLPGVRYHTVRGALDCSGVKDRKQARSKYGVKRPKA I2UHF1 30S ribosomal protein S13 Escherichia coli 0.010360129999999999 1 LEVO ARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKIKELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLM DLGCYRGLRHRRR C3SR52 30S ribosomal protein S15 Escherichia coli 0.010159620999999999 1 LEVO SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQL IERLGLRR D7XN21 30S ribosomal protein S16 Escherichia coli 0.009207571999999999 1 LEVO MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNK AA C3SYP2 30S ribosomal protein S17 Escherichia coli 0.009263946 1 LEVO KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAV A0A080IK26 30S ribosomal protein S18 Escherichia coli 0.006466477 1 LEVO EIDYKDIATLKNYITESGKIVPSRITGTRAKYQRQLARAIKRARYLSLLPYTDRH W1EY92 30S ribosomal protein S20 Escherichia coli 0.00950619 1 LEVO NIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQ INKLA C3TRH7 MAGNESIUM ION 2.4305e-05 83 MG singleParticle particle 7.6 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.5 3.5 GATAN K3 BIOQUANTUM (6k x 4k) 51.0 1 3.0 FSC 0.143 CUT-OFF 129736 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION emd_40051_additional_6.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 319.36 319.36 319.36 90.0 90.0 90.0 X Y Z -0.013791792 0.04508348 -0.00033155832 0.00089715427 0.7984 0.7984 0.7984 AUTHOR ::::EMDATABANK.org::::EMD-40051:::: multi body map-h44-rmtc emd_40051_additional_5.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 319.36 319.36 319.36 90.0 90.0 90.0 X Y Z -0.049181093 0.093366936 -0.00011986091 0.0035371394 0.7984 0.7984 0.7984 AUTHOR ::::EMDATABANK.org::::EMD-40051:::: multi body map-30S emd_40051_additional_4.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 319.36 319.36 319.36 90.0 90.0 90.0 X Y Z -0.0232825 0.055486556 -0.00017942206 0.0015420503 0.7984 0.7984 0.7984 AUTHOR ::::EMDATABANK.org::::EMD-40051:::: 30S head multi body emd_40051_additional_3.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 319.36 319.36 319.36 90.0 90.0 90.0 X Y Z -0.0075928583 0.02639613 -0.00031347948 0.00052186847 0.7984 0.7984 0.7984 AUTHOR ::::EMDATABANK.org::::EMD-40051:::: RmtC multibody emd_40051_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 319.36 319.36 319.36 90.0 90.0 90.0 X Y Z -0.051410522 0.10553782 -0.00010644485 0.0035073434 0.7984 0.7984 0.7984 AUTHOR ::::EMDATABANK.org::::EMD-40051:::: 30S body multi body emd_40051_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 319.36 319.36 319.36 90.0 90.0 90.0 X Y Z -0.040702846 0.09033166 0.00008384795 0.0029811098 0.7984 0.7984 0.7984 AUTHOR ::::EMDATABANK.org::::EMD-40051:::: Relion post processed map emd_40051_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 319.36 319.36 319.36 90.0 90.0 90.0 X Y Z -0.0038883493 0.023777882 0.00023498386 0.0012682261 0.7984 0.7984 0.7984 AUTHOR ::::EMDATABANK.org::::EMD-40051:::: half map emd_40051_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 400 400 400 0 0 0 400 400 400 319.36 319.36 319.36 90.0 90.0 90.0 X Y Z -0.00474653 0.02283714 0.00023502347 0.0012677894 0.7984 0.7984 0.7984 AUTHOR ::::EMDATABANK.org::::EMD-40051:::: half map