2024-10-23 REL RCSB RCSB RCSB 2023-03-08 2024-03-06 2024-03-06 2024-10-23 Other government National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS) United States Locally refined cryoEM structure of receptor from beta-2-adrenergic receptor in complex with GTP-bound Gs heterotrimer (transition intermediate #4 of 20) Papasergi-Scott MM Skiniotis G GPCR, Adrenergic, Receptor, G protein, SIGNALING PROTEIN Papasergi-Scott MM Perez-Hernandez G Batebi H Gao Y Eskici G Seven AB Panova O Hilger D Casiraghi M He F Maul L Gmeiner P Kobilka BK Hildebrand PW Skiniotis G Time-resolved cryo-EM of G-protein activation by a GPCR. Nature UK 629 1182 1191 2024 38480881 doi:10.1038/s41586-024-07153-1 1476-4687 0006 NATUAS EMD-29988 other EM volume 8ggl FULLOVERLAP Complex of beta-2 adrenergic receptor and Gs heterotrimer with GTP Complex of beta-2 adrenergic receptor and Gs heterotrimer with GTP 0 1
Combined datasets of the protein complex from samples plunge frozen at 5 sec, 10 sec, or 17 sec after GTP addition to the sample.
Homo sapiens Beta-2 adrenergic receptor Homo sapiens 0.051767242 1 Spodoptera frugiperda LEVO MKTIIALSYIFCLVFADYKDDDDAMGQPGNGSAFLLAPNRSHAPDHDVENLYFQGTQQRDEVWVVGMGIVMSLIVLAIVF GNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKTWTFGNFWCEFWTSIDVLCVTASIETLCVIAV DRYFAITSPFKYQSLLTKNKARVIILMVWIVSGLTSFLPIQMHWYRATHQEAINCYAEETCCDFFTNQAYAIASSIVSFY VPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPF FIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRSPDFRIAFQELLCLRRSSLKAYGNGYSSNGNTGEQSGLEVL FQGPYHVEQEKENKLLAEDLPGTEDFVGHQGTVPSDNIDSQGRNASTNDSLLETSQVAPA P07550 (5R,6R)-6-(methylamino)-5,6,7,8-tetrahydronaphthalene-1,2,5-triol 0.00020924199999999997 1 G1I water 1.8015e-05 1 HOH singleParticle particle 7.5
GTP was added just prior to freezing at 5 sec, 10 sec, or 17 sec before plunging.
 UltrAuFoil R1.2/1.3 GOLD HOLEY ETHANE 100 277.15 FEI VITROBOT MARK IV
GTP was added just prior to freezing at 5 sec, 10 sec, or 17 sec before plunging..
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 0.4 2.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GATAN K3 (6k x 4k) COUNTING 50.0
The map is the result of combining multiple datasets: cryo-EM imaging of the beta-2AR-Gs + GTP (5 sec) complex was performed on a Titan Krios electron microscope equipped with a K3 Summit direct electron detector (Gatan). The microscope was operated at 300 kV accelerating voltage, with a nominal magnification of 105,000x in counting mode resulting in a magnified pixel size of 0.8677 Angstrom. A total exposure of 60.48 electrons/ Angstrom^2 over 63 frames with defocus ranging from -1.0 - -2.0 micrometers was used. Cryo-EM imaging of beta-2AR-Gs + GTP (10 sec) complex was performed on four separate grids over three collection sessions. The microscope was operated at 300 kV accelerating voltage, with a magnification at the camera of 58,679x in counting mode resulting in a magnified pixel size of 0.8521 Angstrom. For the first and second grids, movies were obtained at an exposure rate of 21.13 electrons/Angstrum^2/sec with defocus ranging from -0.4 - -2.0 micrometers. The total exposure time was 2.717 sec over 77 frames per movie stack. For an additional collection of the first grid, movies were obtained at an exposure rate of 20.95 electrons/ Angstrum^2/sec with defocus ranging from -0.4 -2.0 micrometers. The total exposure time was 2.717 sec over 77 frames per movie stack. For the third and fourth grids, movies were obtained at an exposure rate of 30.71 electrons/ Angstrum^2/sec with defocus ranging from -0.5 - -1.6 micrometers. The total exposure time was 2.008 sec over 79 frames per movie stack. Cryo-EM imaging of beta-2AR-Gs + GTP (17 sec) was performed on a Titan Krios equipped with a post-column energy filter, with a magnification of 105,000x in counting mode resulting in a magnified pixel size of 0.8677 Angstrom. Movies were obtained at an exposure rate of 32.46 electrons/Angstrum^2/sec with defocus ranging from -0.4 - -0.9 micrometers. The total exposure time was 1.999 sec over 79 frames per movie stack.
 1 19918625 3.2 FSC 0.143 CUT-OFF cryoSPARC Local refinement of receptor 129936 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION cryoSPARC cryoSPARC 3DVA emd_40012.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 328 328 328 0 0 0 328 328 328 284.6056 284.6056 284.6056 90.0 90.0 90.0 X Y Z -2.1466796 2.5949051 -0.00034167038 0.029802814 0.8677 0.8677 0.8677 0.2 AUTHOR Sharpened map emd_40012_msk_1.map emd_40012_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 328 328 328 0 0 0 328 328 328 284.6056 284.6056 284.6056 90.0 90.0 90.0 X Y Z -0.45971924 0.794838 -0.00034167033 0.010871609 0.8677 0.8677 0.8677 AUTHOR Unsharpened map emd_40012_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 328 328 328 0 0 0 328 328 328 284.6056 284.6056 284.6056 90.0 90.0 90.0 X Y Z -0.59384733 0.836513 0.0003413694 0.049612537 0.8677 0.8677 0.8677 AUTHOR Half map emd_40012_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 328 328 328 0 0 0 328 328 328 284.6056 284.6056 284.6056 90.0 90.0 90.0 X Y Z -0.5971143 1.0730926 0.00033442173 0.048723213 0.8677 0.8677 0.8677 AUTHOR Half map