2024-11-13 REL PDBe PDBe PDBe 2017-09-19 2017-09-27 2018-01-10 2024-11-13 Netherlands Organization for Scientific Research NWO-VICI-91812628 Netherlands German Research Foundation SFB685 Germany Wellcome Trust 102572/B/13/Z United Kingdom Coxsackievirus A24v in complex with the D1-D2 fragment of ICAM-1 Hurdiss DL Ranson NA Enterovirus, Receptor, Complex, picornavirus, VIRUS Baggen J Hurdiss DL Zocher G Mistry N Roberts RW Slager JJ Guo H van Vliet ALW Wahedi M Benschop K Duizer E de Haan CAM de Vries E Casasnovas JM de Groot RJ Arnberg N Stehle T Ranson NA Thibaut HJ van Kuppeveld FJM Role of enhanced receptor engagement in the evolution of a pandemic acute hemorrhagic conjunctivitis virus. Proc. Natl. Acad. Sci. U.S.A. US 115 397 402 2018 29284752 doi:10.1073/pnas.1713284115 1091-6490 0040 PNASA6 6eit FULLOVERLAP Coxsackievirus A24v in complex with the D1 and D2 domains of ICAM-1 Coxsackievirus A24v in complex with the D1 and D2 domains of ICAM-1 0 1 2 3 4 8 Coxsackievirus A24 1 1 2 3 Coxsackievirus A24 D1 and D2 domains of ICAM-1 1 4 homo sapiens VP1 Coxsackievirus A24 0.034378371 1 LEVO GIEETIDTVITNALQLSQPKPQKQPTAQSTPLTSGVNSQEVPALTAVETGASGQAVPSDVIETRHVVNYKTRSESTLESF FGRSACVTILEVENFNATTDADRKKQFTTWAITYTDTVQLRRKLEFFTYSRFDLEMTFVITERYYASNTGHARNQVYQLM YIPPGAPRPTAWDDYTWQSSSNPSVFYTYGSAPPRMSIPYVGIANAYSHFYDGFARVPLKDETVDSGDTYYGLVTINDFG TLAVRVVNEYNPARITSKIRVYMKPKHVRCWCPRPPRAVPYRGEGVDFKQDSITPLTAVENINTF G3C8J7 VP2 Coxsackievirus A24 0.029817411999999998 1 LEVO SPNVEACGYSDRVRQITLGNSTITTQEAANAVVAYGEWPSYLDDKEANPIDAPTEPDVSSNRFYTLDSVQWKSTSRGWWW KLPDALKDMGMFGQNMYYHYLGRSGYTVHVQCNASKFHQGALGVFAIPEYVMACNTEAKTSYVSYVNANPGEKGGVFDNA YNPSAEASEGRKFAALDYLLGCGVLAGNAFVYPHQIINLRTNNSATLVLPYVNSLAIDCMAKHNNWGLVILPLCKLDYAP NSSTEIPITVTIAPMFTEFNGLRNITVPATQ A0A088F913 VP3 Coxsackievirus A24 0.026637745999999997 1 LEVO GLPTMLTPGSSQFLTSDDFQSPCALPNFDVTPPIHIPGEVFNMMELAEIDSMIPMNSVTGKANTMEMYPIPLDDKGSATP IFSISLSPASDKRLQYTMLGEILNYYTHWTGSLRFTFLFCGSMMATGKILLSYSPPGAKPPTTRKDAMLGTHIIWDLGLQ SSCTMLAPWISNTVYRRCIKDDFTEGGYITCFYQTRIVVPSGTPTSMFMLAFVSACPDFSVRLLRDTNHISQRTLFARAQ Q0GYP7 Intercellular adhesion molecule 1 Homo sapiens 0.0092976 1 Cricetulus griseus LEVO QTSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFL TVYWT P05362 singleParticle particle 10 7.5
TBS buffer (Coxsackievirus A24v) Phosphate buffer (ICAM-1 D1-D2)
 Lacey grids coated in a 3 nm carbon film (Agar Scientific, UK) COPPER 400 CARBON CONTINUOUS 3.0 GLOW DISCHARGE ETHANE 80 8 LEICA EM GP
On-grid binding of the receptor was performed by applying 3 microliters of ICAM-1 (9.85 mg/ml) to the pre-blotted, virus-containing grid, and leaving for 30 seconds before blotting and freezing.
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) INTEGRATING 1 2652 1.5 60.0 1
300 Angstrom sphere generated in spider
 I 3.9 FSC 0.143 CUT-OFF RELION 2.0 26311 PROJECTION MATCHING PROJECTION MATCHING emd_3880.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 464 464 464 0 0 0 464 464 464 494.2064 494.2064 494.2064 90.0 90.0 90.0 X Y Z -0.1644654 0.17634246 0.0014059278 0.011912413 1.0651 1.0651 1.0651 0.00701 AUTHOR Coxsackievirus A24v in complex with the D1-D2 fragment of ICAM-1 OTHER REAL emd_3880_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 464 464 464 0 0 0 464 464 464 494.2064 494.2064 494.2064 90.0 90.0 90.0 X Y Z -0.00527926 0.022838134 0.00073238125 0.0033182686 1.0651 1.0651 1.0651 AUTHOR Coxsackievirus A24v in complex with the D1-D2 fragment of ICAM-1 (unsharpened map).