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    <admin>
        <current_status>
            <date>2018-03-14</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2017-09-12</deposition>
            <header_release>2017-12-20</header_release>
            <map_release>2018-03-14</map_release>
            <update>2018-03-14</update>
        </key_dates>
        <title>Cryo-EM single particle reconstruction of Melbournevirus particle.</title>
        <authors_list>
            <author>Okamoto K</author>
            <author>Miyazaki N</author>
            <author>Reddy KNH</author>
            <author>Hantke FM</author>
            <author>Maia RNCF</author>
            <author>Larsson SDD</author>
            <author>Abergel C</author>
            <author>Claverie JM</author>
            <author>Hajdu J</author>
            <author>Murata K</author>
            <author>Svenda M</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Okamoto K</author>
                    <author order="2">Miyazaki N</author>
                    <author order="3">Reddy HKN</author>
                    <author order="4">Hantke MF</author>
                    <author order="5">Maia FRNC</author>
                    <author order="6">Larsson DSD</author>
                    <author order="7">Abergel C</author>
                    <author order="8">Claverie JM</author>
                    <author order="9">Hajdu J</author>
                    <author order="10">Murata K</author>
                    <author order="11">Svenda M</author>
                    <title>Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly.</title>
                    <journal_abbreviation>Virology</journal_abbreviation>
                    <country>US</country>
                    <volume>516</volume>
                    <first_page>239</first_page>
                    <last_page>245</last_page>
                    <year>2018</year>
                    <external_references type="PUBMED">29407382</external_references>
                    <external_references type="DOI">doi:10.1016/j.virol.2018.01.021</external_references>
                    <external_references type="ISSN">1096-0341</external_references>
                    <external_references type="CSD">0922</external_references>
                    <external_references type="ASTM">VIRLAX</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-3868</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Melbournevirus particle</name>
        <supramolecule_list>
            <virus_supramolecule supramolecule_id="1">
                <name>Melbournevirus</name>
                <parent>0</parent>
                <sci_species_name ncbi="1560514">Melbournevirus</sci_species_name>
                <natural_host database="NCBI">
                    <organism ncbi="5754">Acanthamoeba</organism>
                </natural_host>
                <virus_shell shell_id="1">
                    <name>Capsid</name>
                    <diameter units="&#8491;">2320.0</diameter>
                    <triangulation>309</triangulation>
                </virus_shell>
                <virus_type>VIRION</virus_type>
                <virus_isolate>SPECIES</virus_isolate>
                <virus_enveloped>false</virus_enveloped>
                <virus_empty>false</virus_empty>
            </virus_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <buffer>
                        <ph>7.4</ph>
                    </buffer>
                    <grid>
                        <model>R1.2/1.3 Quantifoil Micro Tools GmbH</model>
                        <material>COPPER</material>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>PLASMA CLEANING</type>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <details />
                    </vitrification>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>JEOL 2200FS</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">4.2</nominal_cs>
                    <nominal_defocus_min units="&#181;m">1.0</nominal_defocus_min>
                    <nominal_defocus_max units="&#181;m">5.0</nominal_defocus_max>
                    <specimen_holder_model>JEOL</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>TVIPS TEMCAM-F415 (4k x 4k)</film_or_detector_model>
                            <average_electron_dose_per_image units="e/&#8491;^2">20.0</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <particle_selection>
                    <number_selected>7005</number_selected>
                </particle_selection>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>EMAN2</name>
                        </software>
                    </software_list>
                </ctf_correction>
                <startup_model type_of_model="INSILICO MODEL">
                    <insilico_model>Random initial model was generated by EMAN2 software.</insilico_model>
                </startup_model>
                <final_reconstruction>
                    <resolution res_type="BY AUTHOR" units="&#8491;">26.3</resolution>
                    <resolution_method>FSC 0.5 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>EMAN2</name>
                        </software>
                    </software_list>
                    <number_images_used>7005</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>ANGULAR RECONSTITUTION</type>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
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        <file>emd_3868.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
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            <row>840</row>
            <sec>840</sec>
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            <y>840</y>
            <z>840</z>
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            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.99535125</minimum>
            <maximum>1.470726</maximum>
            <average>-0.016885828</average>
            <std>0.2911426</std>
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            <x units="&#8491;">3.31</x>
            <y units="&#8491;">3.31</y>
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        <contour_list>
            <contour primary="true">
                <level>0.6</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-3868::::</label>
        <annotation_details>Melbournevirus capsid(applied inner mask)</annotation_details>
    </map>
</emd>