2018-01-31 REL PDBe PDBe PDBe 2017-09-06 2017-11-22 2017-11-22 2018-01-31 Structure of Aeropyrum pernix bacilloform virus 1 APBV1 helical capsid pointy end Huiskonen JT Pchelkine D Gillum A Ptchelkine D Gillum A Mochizuki T Lucas-Staat S Liu Y Krupovic M Phillips SEV Prangishvili D Huiskonen JT Unique architecture of thermophilic archaeal virus APBV1 and its genome packaging. Nat Commun UK 8 1436 1436 2017 29127347 doi:10.1038/s41467-017-01668-0 2041-1723 EMD-3859 associated EM volume
Structure of major capsid protein VP1 of Aeropyrum pernix bacilliform virus 1 APBV1
 Aeropyrum pernix bacilliform virus 1 Aeropyrum pernix bacilliform virus 1 0 Aeropyrum pernix bacilliform virus 1 Aeropyrum pernix VIRION SPECIES false false singleParticle particle 7.
distilled water
 ETHANE-PROPANE
FEI POLARA 300 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.0 37037. NITROGEN GIF Quantum LS 0 20 GATAN K2 QUANTUM (4k x 4k) COUNTING 0.2 1.0 1 6290
Pointy ends extracted from helical particles
 CTFFIND 3
Cylindrical average of pointy ends
 C5 FOURIER SPACE 7.2 FSC 0.143 CUT-OFF RELION 1.4 2572 RANDOM ASSIGNMENT
In-plane angle was calculated from the images. Out-of-plane angle was set to 90 degrees. The third angle was randomized.
 PROJECTION MATCHING RELION 1.4 emd_3859.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 320 320 320 0 0 0 320 320 320 432.0 432.0 432.0 90.0 90.0 90.0 X Y Z -0.03811019 0.08176798 0.00017475817 0.0052796844 1.35 1.35 1.35 0.015 AUTHOR APBV1 pointy tip