2026-08-12 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update DATABASE_REFERENCES citation em_admin _citation.journal_volume _citation.page_first _em_admin.last_update REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY em_admin pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle pdbx_validate_close_contact struct_conn _em_admin.last_update PDBj PDBj 2023-12-30 2024-10-30 2024-10-30 2026-08-12 National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) RO1 DK081418 United States National Institutes of Health/National Institute of Diabetes and Digestive and Kidney Disease (NIH/NIDDK) RO1 DK089883 United States Respiratory complex Peripheral Arm of CI, close form A, focus-refined map of type IB, Wild type mouse under Cold Acclimation Shin Y-C Liao M Respiratory complex, Respiratory supercomplex, ELECTRON TRANSPORT Shin YC Latorre-Muro P Djurabekova A Zdorevskyi O Bennett CF Burger N Song K Xu C Paulo JA Gygi SP Sharma V Liao M Puigserver P Structural basis of respiratory complex adaptation to cold temperatures. Cell 187 6584 2024 39395414 doi:10.1016/j.cell.2024.09.029 1097-4172 8xnr FULLOVERLAP EMDB EMD-38512 associated EM volume
Respiratory complex Peripheral Arm of CI, close form A, focus-refined map of type IB, Wild type mouse under Cold Acclimation
 Respiratory Supercomplex CI:CIII2 Respiratory Supercomplex CI:CIII2 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 Mus musculus 1.32 NADH-ubiquinone oxidoreductase chain 3 Mus musculus 0.013223774999999998 1 LEVO MNLYTVIFINILLSLTLILVAFWLPQMNLYSEKANPYECGFDPTSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQ TIKTSTMMIMAFILVTILSLGLAYEWTQKGLEWTE P03899 7.1.1.2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial Mus musculus 0.024715912 1 LEVO MAALAAPGLLSVRILGLRTAQVQLRRVHQSVATEGPSPSPSPSLSSTQSAVSKAGAGAVVPKLSHLPRSRAEYVVTKLDD LINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVS MGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKLKIWYRR Q9DC70 7.1.1.2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial Mus musculus 0.030191307 1 LEVO MAAAAARVWCRGLLGAASVGRGAGRPSVLWQHVRRESAAADKRPTVRPRSDVTHKQLSAFGEYVAEILPKYVQQVQVSCL DELEICIHPDGVIPTLTFLRDHTNAQFKSLADLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTYADELTPIDSIVSVHI AANWYEREVWDMFGVFFFNHPDLRRILTDYGFEGHPFRKDFPLTGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEA FPAYRQPPESLKLEAGDKKPETK Q9DCT2 7.1.1.2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial Mus musculus 0.052693559 1 LEVO MAALRALRCLRGVGAPVLRPGSGIRLPSQPSRGARQWQPDIEWAEQFSGAVMYPSKETAHWKPPPWNDVDILKEKAVTNM TLNFGPQHPAAHGVLRLVLELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSIAVEKLLN IQPPPRAQWIRVLFGEITRILNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL LDDIYEFSKNFSLRIDEVEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPI GSRGDCYDRYLCRVEEMRQSLRIIEQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAI EAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEIDR Q91WD5 7.1.1.2 NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial Mus musculus 0.027318336 1 LEVO MFSLALRARATGLAAQWGRHARNLHKTAVHNGAGGALFVHRDTPENNPDTPFDFTPENYKRIEAIVKNYPEGHQAAAVLP VLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRDSDSILETLQRKLGIKVG ETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKVPKPGPRSGRFCCEPAGGLTSLTEPPKGP GFGVQAGL Q9D6J6 7.1.1.2 NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial Mus musculus 0.050904152 1 LEVO MLAARHFLGGLVPVRVSVRFSSGTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGALRRGDWYKTKEILLKGPDWILGEM KTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAAYIYIRG EFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPG GSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFV KGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEDRMQRFAQQHRAWQAAS Q91YT0 7.1.1.2 NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial Mus musculus 0.07986668799999999 1 LEVO MLRIPIKRALIGLSNSPKGYVRTTGTAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLV EIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAV EDKNIGPLVKTIMTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYIEKMFMSELSGNVIDICPVGALTSKPYAFTA RPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTYTSWE DALSRVAGMLQNFEGNAVAAIAGGLVDAEALVALKDLLNKVDSDNLCTEEIFPTEGAGTDLRSNYLLNTTIAGVEEADVV LLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDIASGRHSFCEVLKDAKKPMVVLGSSA LQRDDGAAILVAVSNMVQKIRVTTGVAAEWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKMLFLLGADGGCITRQDL PKDCFIVYQGHHGDVGAPMADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGITLPYDTLD QVRNRLEEVSPNLVRYDDIEETNYFQQASELAKLVNQEVLADPLVPPQLTIKDFYMTDSISRASQTMAKCVKAVTEGAQA VEEPSIC Q91VD9 7.1.1.2 NADH-ubiquinone oxidoreductase chain 1 Mus musculus 0.036077016 1 LEVO MFFINILTLLVPILIAMAFLTLVERKILGYMQLRKGPNIVGPYGILQPFADAMKLFMKEPMRPLTTSMSLFIIAPTLSLT LALSLWVPLPMPHPLINLNLGILFILATSSLSVYSILWSGWASNSKYSLFGALRAVAQTISYEVTMAIILLSVLLMNGSY SLQTLITTQEHMWLLLPAWPMAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYTNIILMNALTTI IFLGPLYYINLPELYSTNFMMEALLLSSTFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIFTAGVPPYM P03888 7.1.1.2 NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial Mus musculus 0.024068355 1 LEVO MYRLSSSMLPRALAQAMRTGHLNGQSLHSSAVAATYKYVNKKEQESEVDMKSATDNAARILMWTELIRGLGMTLSYLFRE PATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQE ACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR Q8K3J1 7.1.1.2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial Mus musculus 0.042588129 1 LEVO MAAAVRFRVVRALPMSRPAITAAATSVFCGSSHRQLHHAVIPHGKGGRSSVSGVVATVFGATGFLGRYVVNHLGRMGSQV IIPYRCDVYDIMHLRLMGDLGQLTFLEWDARDKDSIRKAVQHSNVVINLIGREWETRNFDFEDVFVNIPRAIAQASKEAG VERFIHVSHLNASMKSSSKSLRSKAVGEKEVRSVFPEAIIIRPSDIFGREDRFLNHFANYRWFLAVPLVSLGFKTVKQPV YVADVSKGIVNATKDPDAVGKTFAFTGPNRYLLFHLVKYIFGMTHRTFIPYPLPLFVYSWIGKLFGLSPFEPWTTKDKVE RIHISDVMPTDLPGLEDLGVQPTPLELKSIEVLRRHRTYRWLSSEIEETKPAKTVNY Q9DC69 NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial Mus musculus 0.019814725 1 LEVO MAAVSISVSLRQAMLGRRAMATAAVSVCRVPSRLLSTSTWKLADNQTRDTQLITVDEKLDITTLTGVPEEHIKTRKVRIF VPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSY GANFSWNKRTRVSTK Q9CXZ1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial Mus musculus 0.013041827999999998 1 LEVO MAAVLTFRRLLTLPRAARGFGVQVSPSGEKITHTGQVYDEKDYRRVRFVDRQKEVNENFAIDLIAQQPVNEVEHRIIACD GGGGALGHPKVYINLDKETKTGTCGYCGLQFKQHHH P52503 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 Mus musculus 0.010932675 1 LEVO MAAAAASRAVGAKLGLREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWARYAFGQEKTVSLN NLSADEVTRAMQNVLSGKA Q9CQ75 Acyl carrier protein, mitochondrial Mus musculus 0.017390289 1 LEVO MASRVLCACVRRLPAAFAPLPRLPTLALARPLSTTLCPEGIRRRPGALQSALALAQVPGTVTHLCRQYSDAPPLTLDGIK DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADKKDVYE Q9CR21 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 Mus musculus 0.013380719 1 LEVO MAGLLKKTTGLVGLAVCDTPHERLTILYTKTLDILKHFPKHAAYRKYTEQITNEKLDMVKAEPDVKKLEALLQGGEVEEV ILQAEKELSLARKMLKWKPWEPLVEEPPANQWKWPI Q9CPP6 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 Mus musculus 0.015311858 1 LEVO MAAAATGLRQAAAAAASTSVKPIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLDITVKQGRDKVREMFMKNAHVTDPR VVDLLVIKGKMELQETIKVWKQRTHVMRFFHETETPRPKDFLSKFYMGHDP Q9CQZ5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 Mus musculus 0.020025127 1 LEVO MPGIVELPTLEELKVEEVKVSSAVLKAAAHHYGAQCDKTNKEFMLCRWEEKDPRRCLKEGKLVNGCALNFFRQIKSHCAE PFTEYWTCLDYSNMQLFRHCRQQQAKFDQCVLDKLGWVRPDLGQLSKVTKVKTDRPLPENPYHSRARPEPNPVIEGDLKP AKHGTRFFFWTV Q9DCJ5 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 Mus musculus 0.016881588 1 LEVO MAASKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGALIFGYWRMMRWNQERRRLLIEDLEARIALMPLFQAEKD RRTLQILRENLEEEAIIMKDVPNWKVGESVFHTTRWVPPLIGEMYGLRTKEEMSNANFGFTWYT Q9ERS2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 Mus musculus 0.008149524 1 LEVO MWFEILPGLAIMGVCLVIPGVSTAYIHKFTNGGKEKRVARVQYQWYLMERDRRISGVNRYYVSKGLENID O35683 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 Mus musculus 0.009338866999999999 1 LEVO MAGRISAFLKNAWAKEPVLVVSFSVWGLAIIMPMISPYTKYASMINKATPYNYPVPVRDDGNMPDVPSHPQDPLGPSLDW LKNL Q9CQ91 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 Mus musculus 0.017112416000000002 1 LEVO MELVEVLKRGVQQVTGHGGLRGLLRVFFRANDIRIGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGS MVPPEWHRWLHCMTDDPPTTNPPTARKFIWTNHKFNVSATPEQYVPYSTTRKKIHEWVPPSTPYK Q7TMF3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 Mus musculus 0.012595592 1 LEVO MASATRVIQKLRNWASGQDLQAKLQLRYQEIAKRTQPPPKLPVGPSHKLSNNYYCTRDGRREVVPPSIIMSSQKALVSGK AAESSAMAATEKKAVTPAPPMKRWELSKDQPYL Q9Z1P6 NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial Mus musculus 0.011833504 1 LEVO MAVSLLLRGGRIRALKAVLLEARVFPGELVSVVRLSTESEKSAKEKELHPKTQSVLKEPEPTDTTTYKNLQHHDYNTYTF LDLNLDLSKFRLPQPSSGRESPRH Q8BK30 1,2-Distearoyl-sn-glycerophosphoethanolamine 0.000748065 3 3PE IRON/SULFUR CLUSTER 0.00035163999999999996 6 SF4 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE 0.0007901449999999999 2 PC1 UBIQUINONE-1 0.00025028999999999996 1 UQ1 FE2/S2 (INORGANIC) CLUSTER 0.00017581999999999998 2 FES FLAVIN MONONUCLEOTIDE 0.00045634399999999997 1 FMN Ubiquinone-9 0.000795226 1 UQ9 NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE 0.000745421 1 NDP ZINC ION 6.5409e-05 1 ZN ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate 0.000584703 1 EHZ singleParticle particle 0.33 8.0 ETHANE FEI TALOS ARCTICA OTHER OTHER FIELD EMISSION GUN 200 1.0 2.2 GATAN K3 (6k x 4k) 46.1 GATAN K3 (6k x 4k) 45.9 1 NONE 7AK5 3.3 FSC 0.143 CUT-OFF 48863 ANGULAR RECONSTITUTION ANGULAR RECONSTITUTION emd_38512.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -1.4207602 5.4540954 0.00096713944 0.08729656 1.1 1.1 1.1 0.55 AUTHOR Focus-refined map, Peripheral Arm, close form A, Cold Acclimated, Type IB of Respiratory Supercomplex CI:CIII2 emd_38512_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -0.8695105 3.1499724 0.0022016491 0.115449145 1.1 1.1 1.1 AUTHOR Focus-refined half map B, Peripheral Arm, close form A, Cold Acclimated, Type IB of Respiratory Supercomplex CI:CIII2 emd_38512_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 422.40002 422.40002 422.40002 90.0 90.0 90.0 X Y Z -0.9554643 3.1347222 0.0022102087 0.11543068 1.1 1.1 1.1 AUTHOR Focus-refined half map A, Peripheral Arm, close form A, Cold Acclimated, Type IB of Respiratory Supercomplex CI:CIII2