<emd xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" emdb_id="EMD-3849" version="3.0.0.0" xsi:schemaLocation="https://github.com/emdb-empiar/emdb-schemas/blob/master/v3/v3_0_0_0/emdb.xsd">
    <admin>
        <current_status>
            <date>2017-11-08</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
        </current_status>
        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2017-08-13</deposition>
            <header_release>2017-10-18</header_release>
            <map_release>2017-10-18</map_release>
            <update>2017-11-08</update>
        </key_dates>
        <title>Single particle cryo-STEM of ferritin  with Fe at low stoichiometry</title>
        <authors_list>
            <author>Elad N</author>
            <author>Bellapadrona G</author>
            <author>Houben L</author>
            <author>Sagi I</author>
            <author>Elbaum M</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Elad N</author>
                    <author order="2">Bellapadrona G</author>
                    <author order="3">Houben L</author>
                    <author order="4">Sagi I</author>
                    <author order="5">Elbaum M</author>
                    <title>Detection of isolated protein-bound metal ions by single-particle cryo-STEM.</title>
                    <journal_abbreviation>Proc. Natl. Acad. Sci. U.S.A.</journal_abbreviation>
                    <country>US</country>
                    <volume>114</volume>
                    <first_page>11139</first_page>
                    <last_page>11144</last_page>
                    <year>2017</year>
                    <external_references type="PUBMED">28973937</external_references>
                    <external_references type="DOI">doi:10.1073/pnas.1708609114</external_references>
                    <external_references type="ISSN">1091-6490</external_references>
                    <external_references type="CSD">0040</external_references>
                    <external_references type="ASTM">PNASA6</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-3848</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Contains ferritin with Zn reconstructed from cryo-STEM images.</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-3849</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
                </relationship>
            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Human heavy chain ferritin with Fe at low stoichiometry</name>
        <supramolecule_list>
            <complex_supramolecule supramolecule_id="1">
                <name>Human heavy chain ferritin with Fe at low stoichiometry</name>
                <parent>0</parent>
                <details>Bacterially expressed and purified human heavy chain ferritin mixed with a 100 fold molar excess of Fe(II)SO4</details>
                <natural_source database="NCBI">
                    <organism ncbi="9606">Homo sapiens</organism>
                </natural_source>
                <recombinant_expression database="NCBI">
                    <recombinant_organism ncbi="562">Escherichia coli</recombinant_organism>
                </recombinant_expression>
                <molecular_weight>
                    <theoretical units="MDa">0.504</theoretical>
                </molecular_weight>
            </complex_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>singleParticle</method>
            <aggregation_state>particle</aggregation_state>
            <specimen_preparation_list>
                <single_particle_preparation preparation_id="1">
                    <concentration units="mg/mL">0.13</concentration>
                    <buffer>
                        <ph>7.2</ph>
                        <component>
                            <concentration units="mM">50.0</concentration>
                            <formula>HEPES-NaOH</formula>
                        </component>
                        <component>
                            <concentration units="M">0.2</concentration>
                            <formula>NaCl</formula>
                        </component>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/1</model>
                        <material>COPPER</material>
                        <mesh>200</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                        <support_film film_type_id="2">
                            <film_material>CARBON</film_material>
                            <film_topology>CONTINUOUS</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                            <atmosphere>AIR</atmosphere>
                        </pretreatment>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE</cryogen_name>
                        <chamber_humidity units="percentage">95</chamber_humidity>
                        <chamber_temperature units="K">297</chamber_temperature>
                        <instrument>LEICA EM GP</instrument>
                        <details />
                    </vitrification>
                    <details>For metal loading, stock protein (2.9 mg/ml) was diluted to 0.25 mg/ml and mixed with a 100 fold molar excess of Fe(II)SO4.</details>
                </single_particle_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <single_particle_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI F20</microscope>
                    <illumination_mode>OTHER</illumination_mode>
                    <imaging_mode>OTHER</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <c2_aperture_diameter units="&#181;m">70.0</c2_aperture_diameter>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <nominal_magnification>450000.</nominal_magnification>
                    <specimen_holder_model>GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER</specimen_holder_model>
                    <cooling_holder_cryogen>NITROGEN</cooling_holder_cryogen>
                    <details>STEM mode imaging using Fischione model 3000 HAADF detector. Camera length: 520 mm.</details>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>OTHER</film_or_detector_model>
                            <digitization_details>
                                <dimensions>
                                    <width units="pixel">2048</width>
                                    <height units="pixel">2048</height>
                                </dimensions>
                            </digitization_details>
                            <number_grids_imaged>1</number_grids_imaged>
                            <number_real_images>58</number_real_images>
                            <average_electron_dose_per_image units="e/&#8491;^2">127.0</average_electron_dose_per_image>
                            <details>ADF images collected with a Fischione Model 3000 high-angle annular DF detector</details>
                        </image_recording>
                    </image_recording_list>
                </single_particle_microscopy>
            </microscopy_list>
            <singleparticle_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <details>Fischione 3000 HAADF</details>
                <particle_selection>
                    <number_selected>1484</number_selected>
                    <details>Manually selected</details>
                </particle_selection>
                <startup_model type_of_model="PDB ENTRY">
                    <pdb_model>
                        <pdb_id>2CEI</pdb_id>
                    </pdb_model>
                    <details>The initial model was prepared from the of the human ferritin heavy chain crystal structure from which all heavy atoms were removed. The protein PDB coordinates were converted to structure factors and low pass filtered to 4 nm.</details>
                </startup_model>
                <final_reconstruction>
                    <applied_symmetry>
                        <point_group>O</point_group>
                    </applied_symmetry>
                    <resolution res_type="BY AUTHOR" units="&#8491;">21.0</resolution>
                    <resolution_method>FSC 0.143 CUT-OFF</resolution_method>
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.4</version>
                        </software>
                    </software_list>
                    <number_images_used>1484</number_images_used>
                </final_reconstruction>
                <initial_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing />
                </initial_angle_assignment>
                <final_angle_assignment>
                    <type>PROJECTION MATCHING</type>
                    <projection_matching_processing />
                    <software_list>
                        <software>
                            <name>RELION</name>
                            <version>1.4</version>
                        </software>
                    </software_list>
                </final_angle_assignment>
            </singleparticle_processing>
        </structure_determination>
    </structure_determination_list>
    <map format="CCP4" size_kbytes="2049">
        <file>emd_3849.map.gz</file>
        <symmetry>
            <space_group>1</space_group>
        </symmetry>
        <data_type>IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES)</data_type>
        <dimensions>
            <col>80</col>
            <row>80</row>
            <sec>80</sec>
        </dimensions>
        <origin>
            <col>0</col>
            <row>0</row>
            <sec>0</sec>
        </origin>
        <spacing>
            <x>80</x>
            <y>80</y>
            <z>80</z>
        </spacing>
        <cell>
            <a units="&#8491;">264.0</a>
            <b units="&#8491;">264.0</b>
            <c units="&#8491;">264.0</c>
            <alpha units="deg">90.0</alpha>
            <beta units="deg">90.0</beta>
            <gamma units="deg">90.0</gamma>
        </cell>
        <axis_order>
            <fast>X</fast>
            <medium>Y</medium>
            <slow>Z</slow>
        </axis_order>
        <statistics>
            <minimum>-0.026305879</minimum>
            <maximum>0.04511763</maximum>
            <average>0.0006757258</average>
            <std>0.0042300415</std>
        </statistics>
        <pixel_spacing>
            <x units="&#8491;">3.3</x>
            <y units="&#8491;">3.3</y>
            <z units="&#8491;">3.3</z>
        </pixel_spacing>
        <contour_list>
            <contour primary="true">
                <level>0.04</level>
                <source>AUTHOR</source>
            </contour>
        </contour_list>
        <label>::::EMDATABANK.org::::EMD-3849::::</label>
        <annotation_details>Ferritin with 100 Fe atoms from single particle cryo-STEM data</annotation_details>
    </map>
</emd>