2018-01-24 REL PDBe PDBe PDBe 2017-07-20 2017-08-23 2017-11-29 2018-01-24 Electron tomographic slices of the nuclear envelope of HeLa cell in interphase Otsuka S Ellenberg J Otsuka S Steyer AM Schorb M Heriche JK Hossain MJ Sethi S Kueblbeck M Schwab Y Beck M Ellenberg J Postmitotic nuclear pore assembly proceeds by radial dilation of small membrane openings. Nat. Struct. Mol. Biol. US 25 21 28 2018 29323269 doi:10.1038/s41594-017-0001-9 1545-9985 EMD-3820 associated EM volume HeLa cell HeLa cell 0
Cells were high-pressure frozen and freeze-substituted into Lowicryl resin.
Homo sapiens HeLa tomography cell 7.4
CO2-independent medium without phenol red (Invitrogen), containing 20% FCS, 20% Ficoll PM400 2 mM l-glutamine, and 100 ug/ml penicillin and streptomycin
 NEGATIVE uranyl acetate and lead citrate Lowicryl resin
Frozen cells were incubated with 0.1% uranyl acetate in acetone at -90C for 20-24 hr and, after infiltration into Lowicryl resin and UV-polymerization, samples were further polymerized by sunlight for 3-4 days.
 Grid FORMVAR CONTINUOUS NITROGEN
CMC university Medical Center Utrecht 15 OTHER
High pressure freezing chamber was 1.0 mm thick in total, 3.0 mm diameter, with central cavities 50 um deep.. The value given for _emd_high_pressure_freezing.instrument is HPM 010. This is not in a list of allowed values set(['LEICA EM PACT2', 'LEICA EM PACT', 'EMS-002 RAPID IMMERSION FREEZER', 'OTHER', 'LEICA EM HPM100', 'BAL-TEC HPM 010']) so OTHER is written into the XML file.
 20% FBS and Ficoll PM400 Leica Ultracut UCT 25 300 FEI TECNAI F30 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.26 0.5 15500. OTHER FEI EAGLE (4k x 4k) 4096 4096 121 200.0 1 BACK PROJECTION IMOD 4.5.6
Dual axis tilt series were aligned using gold fiducial markers
121 IMOD 4.5.6 emd_3820.map.gz 1 IMAGE STORED AS SIGNED INTEGER (2 BYTES) 4096 4096 326 0 0 150 4096 4096 326 30720.0 30720.0 2445.0 90.0 90.0 90.0 X Y Z -4205. 1647. 173.766950000000008 219.101499999999987 7.5 7.5 7.5 AUTHOR None