2019-11-06 REL PDBe PDBe PDBe 2017-07-18 2017-08-23 2017-09-13 2019-11-06 German Research Foundation SFB860, SPP1935 Germany Volkswagen Foundation Germany European Research Council TRANSREGULON Germany Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC4 Bernecky C Plitzko JM Cramer P Bernecky C Plitzko JM Cramer P Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp. Nat. Struct. Mol. Biol. US 24 809 815 2017 28892040 doi:10.1038/nsmb.3465 1545-9985 EMD-3818 associated EM volume
Crystal structure of the KOWx-KOW4 domain of human DSIF
 EMD-3815 other EM volume EMD-3816 other EM volume EMD-3817 other EM volume EMD-3819 other EM volume RNA polymerase II-DSIF elongation complex RNA polymerase II-DSIF elongation complex 0 0.69 RNA polymerase II 1 Bos taurus 0.52 DSIF 1 Homo sapiens Escherichia coli BL21(DE3) 0.13 DNA-RNA synthetic construct 1 synthetic construct synthetic construct 0.04 singleParticle particle 0.25 7.25 5.0 HEPES 150.0 NaCl sodium chloride 0.01 ZnCl2 zinc chloride 1.0 dithiothreitol
pH was adjusted at 25 degrees Celsius
 Quantifoil R2/1 COPPER 200 CARBON HOLEY GLOW DISCHARGE AIR ETHANE 100 277 FEI VITROBOT MARK IV
Sample (four microliters) was applied to glow-discharged Quantifoil R 2/1 holey carbon grids, which were then blotted for 8.5s and plunge-frozen in liquid ethane..
FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 70.0 2.7 0.6 0.6 3.6 3.6 37000. 37037. FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Quantum 0 20 GATAN K2 SUMMIT (4k x 4k) SUPER-RESOLUTION 1-33 1 2549 9.9 33.0
Movies were aligned and binned to the physical pixel size of 1.35 angstroms.
 1 687928 CTFFIND 4.0.16 EMD-3218 C1 FOURIER SPACE 3.7 FSC 0.143 CUT-OFF RELION 1.4 76394 PROJECTION MATCHING RELION 1.4 PROJECTION MATCHING RELION 1.4 emd_3818.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 345.6 345.6 345.6 90.0 90.0 90.0 X Y Z -0.046392817 0.13966373 -0.0000141452165 0.0050458345 1.35 1.35 1.35 0.022 AUTHOR Locally filtered map, B-factor 0 emd_3818_msk_1.map emd_3818_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 345.6 345.6 345.6 90.0 90.0 90.0 X Y Z -0.2387105 0.39928967 -0.000012443231 0.013475125 1.35 1.35 1.35 AUTHOR None emd_3818_additional_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 345.6 345.6 345.6 90.0 90.0 90.0 X Y Z -0.043222692 0.13291895 -0.000012443231 0.005423079 1.35 1.35 1.35 AUTHOR None emd_3818_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 345.6 345.6 345.6 90.0 90.0 90.0 X Y Z -0.02895174 0.07039769 -0.0000051526163 0.0038913917 1.35 1.35 1.35 AUTHOR Halfmap 1 emd_3818_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 345.6 345.6 345.6 90.0 90.0 90.0 X Y Z -0.03203144 0.0771406 -0.0000072906146 0.0039056407 1.35 1.35 1.35 AUTHOR Halfmap 2