2024-12-04 REL PDBj PDBj PDBj 2023-11-28 2024-11-27 2024-11-27 2024-12-04 Academia Sinica (Taiwan) AS-SUMMIT-107 Taiwan Academia Sinica (Taiwan) AS-SUMMIT-108 Taiwan Academia Sinica (Taiwan) AS-SUMMIT-109 Taiwan Academia Sinica (Taiwan) AS-GCS-108-08 Taiwan Academia Sinica (Taiwan) AS-IA-110-M05 Taiwan Academia Sinica (Taiwan) AS-GCS-112-M03 Taiwan Fab domain of Immunoglobulin (IgG) reconstruction using phase plate single-particle cryo-EM Lin HH Wang CH Wu YM Tu IP Chang WH immunoglobulin, rituximab, Fab, cryoEM, volta phase plate, IMMUNE SYSTEM Lin HH Wang CH Huang SH Lin SY Kato T Namba K Hosogi N Song C Murata K Yen CH Hsu TL Wong CH Wu YM Tu IP Chang WH Use of phase plate cryo-EM reveals conformation diversity of therapeutic IgG with 50 kDa Fab fragment resolved below 6 angstrom. Sci Rep UK 14 14079 14079 2024 38890341 doi:10.1038/s41598-024-62045-8 2045-2322 Fab domain of Rituximab Fab domain of Rituximab 0
The segmentation of Fab domain from Rituximab IgG was treated by using the PierceTM Fab preparation kit (Thermo Fisher Scientific Inc., Waltham, MA, USA)
Mus musculus singleParticle particle 0.2 6.5 ETHANE 98 277 FEI VITROBOT MARK IV FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 50.0 2.7 0.5 0.8 105000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN VOLTA PHASE PLATE GATAN K3 (6k x 4k) OTHER 50 1.01 1
Super Resolution mode
288931
ab-initio map was generated by cryoSPARC.
 6.64 FSC 0.143 CUT-OFF 72035 RANDOM ASSIGNMENT cryoSPARC 4.1.1 MAXIMUM LIKELIHOOD cryoSPARC 4.1.1 emd_38154.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 180 180 180 0 0 0 180 180 180 149.4 149.4 149.4 90.0 90.0 90.0 X Y Z -0.4249738 1.2113891 0.002824923 0.03360934 0.83 0.83 0.83 0.16 AUTHOR Mask was reconstructed and sharpened by cryoSPARC. emd_38154_msk_1.map emd_38154_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 180 180 180 0 0 0 180 180 180 149.4 149.4 149.4 90.0 90.0 90.0 X Y Z -0.6747374 0.9872891 0.0008818015 0.097052805 0.83 0.83 0.83 AUTHOR Half map A emd_38154_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 180 180 180 0 0 0 180 180 180 149.4 149.4 149.4 90.0 90.0 90.0 X Y Z -0.6765649 0.9027765 0.0008502558 0.09677605 0.83 0.83 0.83 AUTHOR Half map B