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    <admin>
        <current_status>
            <date>2017-08-02</date>
            <code>REL</code>
            <processing_site>PDBe</processing_site>
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        <sites>
            <deposition>PDBe</deposition>
            <last_processing>PDBe</last_processing>
        </sites>
        <key_dates>
            <deposition>2017-07-14</deposition>
            <header_release>2017-07-26</header_release>
            <map_release>2017-07-26</map_release>
            <update>2017-08-02</update>
        </key_dates>
        <title>Tomogram of the salmonella enterica wild-type bacterial flagellar motor</title>
        <authors_list>
            <author>Beeby M</author>
            <author>Ribardo DA</author>
            <author>Brennan CA</author>
            <author>Ruby EG</author>
            <author>Jensen GJ</author>
            <author>Hendrixson DR</author>
        </authors_list>
    </admin>
    <crossreferences>
        <citation_list>
            <primary_citation>
                <journal_citation published="true">
                    <author order="1">Beeby M</author>
                    <author order="2">Ribardo DA</author>
                    <author order="3">Brennan CA</author>
                    <author order="4">Ruby EG</author>
                    <author order="5">Jensen GJ</author>
                    <author order="6">Hendrixson DR</author>
                    <title>Diverse high-torque bacterial flagellar motors assemble wider stator rings using a conserved protein scaffold.</title>
                    <journal_abbreviation>Proc. Natl. Acad. Sci. U.S.A.</journal_abbreviation>
                    <country>US</country>
                    <volume>113</volume>
                    <first_page>E1917</first_page>
                    <last_page>E1926</last_page>
                    <year>2016</year>
                    <external_references type="PUBMED">26976588</external_references>
                    <external_references type="DOI">doi:10.1073/pnas.1518952113</external_references>
                    <external_references type="ISSN">1091-6490</external_references>
                    <external_references type="CSD">0040</external_references>
                    <external_references type="ASTM">PNASA6</external_references>
                </journal_citation>
            </primary_citation>
        </citation_list>
        <emdb_list>
            <emdb_reference>
                <emdb_id>EMD-3154</emdb_id>
                <relationship>
                    <other>other EM volume</other>
                </relationship>
                <details>Salmonella enterica wild-type bacterial flagellar motor</details>
            </emdb_reference>
            <emdb_reference>
                <emdb_id>EMD-3813</emdb_id>
                <relationship>
                    <other>associated EM volume</other>
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            </emdb_reference>
        </emdb_list>
    </crossreferences>
    <sample>
        <name>Salmonella enterica Flagellar motor</name>
        <supramolecule_list>
            <organelle_or_cellular_component_supramolecule supramolecule_id="1">
                <name>Salmonella enterica Flagellar motor</name>
                <parent>0</parent>
                <natural_source database="NCBI">
                    <organism ncbi="590">Salmonella</organism>
                    <strain>TH16943</strain>
                    <cellular_location>Cell wall</cellular_location>
                </natural_source>
            </organelle_or_cellular_component_supramolecule>
        </supramolecule_list>
    </sample>
    <structure_determination_list>
        <structure_determination structure_determination_id="1">
            <method>tomography</method>
            <aggregation_state>cell</aggregation_state>
            <specimen_preparation_list>
                <tomography_preparation preparation_id="1">
                    <buffer>
                        <ph>7.</ph>
                        <details>PH is not know. PH of 7 was added because PH is a mandatory item.</details>
                    </buffer>
                    <grid>
                        <model>Quantifoil R2/2</model>
                        <mesh>200</mesh>
                        <support_film film_type_id="1">
                            <film_material>CARBON</film_material>
                            <film_topology>HOLEY</film_topology>
                        </support_film>
                        <pretreatment>
                            <type>GLOW DISCHARGE</type>
                        </pretreatment>
                        <details>Quantifoil R2/2 grids (200-mesh) (Quantifoil Micro Tools GmbH) were glow-discharged for 60 s at 10 mA.</details>
                    </grid>
                    <vitrification>
                        <cryogen_name>ETHANE-PROPANE</cryogen_name>
                        <chamber_humidity units="percentage">100</chamber_humidity>
                        <instrument>FEI VITROBOT MARK III</instrument>
                        <details />
                    </vitrification>
                    <details>Salmonella strain TH16943 (ParaftsZ) was grown aerobically overnight in LB broth from freezer stocks at 37C. After overnight culture, 50 uL of 5% (wt/vol) L-arabinose were added to 5 mL fresh LB broth for each culture, and cultures were incubated for an additional 5 h. To enrich for minicells, 3 mL this culture were spun at 6,000 x g for 5 min, and the supernatant was recovered. The supernatant was spin-concentrated by centrifugation at 18,000 x g for 5 min, and the resultant pellet was resuspended in 50 uL LB broth and was immediately plunge-frozen.</details>
                    <fiducial_markers_list>
                        <fiducial_marker>
                            <manufacturer>Sigma-Aldrich</manufacturer>
                            <diameter units="nanometer">10</diameter>
                        </fiducial_marker>
                    </fiducial_markers_list>
                    <sectioning>
                        <other_sectioning>NO SECTIONING</other_sectioning>
                    </sectioning>
                </tomography_preparation>
            </specimen_preparation_list>
            <microscopy_list>
                <tomography_microscopy microscopy_id="1">
                    <microscope>FEI TECNAI 20</microscope>
                    <illumination_mode>FLOOD BEAM</illumination_mode>
                    <imaging_mode>BRIGHT FIELD</imaging_mode>
                    <electron_source>FIELD EMISSION GUN</electron_source>
                    <acceleration_voltage units="kV">200</acceleration_voltage>
                    <nominal_cs units="mm">2.0</nominal_cs>
                    <nominal_defocus_min units="&#181;m">4.0</nominal_defocus_min>
                    <calibrated_defocus_min units="&#181;m">4.0</calibrated_defocus_min>
                    <nominal_defocus_max units="&#181;m">10.0</nominal_defocus_max>
                    <nominal_magnification>50000.</nominal_magnification>
                    <specimen_holder_model>GATAN 914 HIGH TILT LIQUID NITROGEN CRYO TRANSFER TOMOGRAPHY HOLDER</specimen_holder_model>
                    <image_recording_list>
                        <image_recording image_recording_id="1">
                            <film_or_detector_model>FEI FALCON II (4k x 4k)</film_or_detector_model>
                            <digitization_details>
                                <dimensions>
                                    <width units="pixel">1024</width>
                                    <height units="pixel">1024</height>
                                </dimensions>
                            </digitization_details>
                            <number_grids_imaged>1</number_grids_imaged>
                            <average_electron_dose_per_image units="e/&#8491;^2">0.6</average_electron_dose_per_image>
                        </image_recording>
                    </image_recording_list>
                </tomography_microscopy>
            </microscopy_list>
            <tomography_processing image_processing_id="1">
                <image_recording_id>1</image_recording_id>
                <final_reconstruction>
                    <resolution_method>OTHER</resolution_method>
                    <software_list>
                        <software>
                            <name>IMOD</name>
                        </software>
                        <software>
                            <name>RAPTOR</name>
                        </software>
                        <software>
                            <name>Leginon</name>
                        </software>
                    </software_list>
                    <number_images_used>201</number_images_used>
                </final_reconstruction>
                <ctf_correction>
                    <software_list>
                        <software>
                            <name>TOMOCTF</name>
                            <processing_details>High-defocus datasets were contrast transfer function (CTF)-corrected</processing_details>
                        </software>
                    </software_list>
                </ctf_correction>
            </tomography_processing>
        </structure_determination>
    </structure_determination_list>
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