2025-07-23 REL PDBc INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY COORDINATE_REPLACEMENT AUTHOR Ligand geometry STRUCTURE_SUMMARY atom_site entity entity_poly entity_poly_seq entity_src_gen pdbx_contact_author pdbx_entity_instance_feature pdbx_entry_details pdbx_nonpoly_scheme pdbx_poly_seq_scheme pdbx_struct_sheet_hbond pdbx_unobs_or_zero_occ_residues pdbx_validate_close_contact pdbx_validate_planes pdbx_validate_torsion refine_ls_restr struct_conf struct_conn struct_ref struct_ref_seq struct_ref_seq_dif struct_sheet struct_sheet_order struct_sheet_range _entity.formula_weight _entity.pdbx_description _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_src_gen.gene_src_common_name _entity_src_gen.pdbx_end_seq_num _pdbx_entry_details.has_ligand_of_interest _pdbx_nonpoly_scheme.auth_seq_num _refine_ls_restr.dev_ideal _refine_ls_restr.number _struct_conn.pdbx_dist_value _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_label_seq_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref_seq.db_align_beg _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end _struct_ref_seq.seq_align_beg _struct_ref_seq.seq_align_end DATABASE_REFERENCES citation citation_author _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year STRUCTURE_SUMMARY em_admin pdbx_entry_details pdbx_modification_feature _em_admin.last_update _pdbx_entry_details.has_protein_modification DATA_COLLECTION em_admin em_software _em_admin.last_update _em_software.name EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name PDBj PDBc 2023-10-15 2023-11-29 2023-11-29 2025-07-23 Not funded XBB.1.5 RBD in complex with ACE2 Feng LL Feng LL SARS-CoV-2, XBB.1.5, ACE2, RBD, VIRAL PROTEIN/HYDROLASE, VIRAL PROTEIN-HYDROLASE complex Jian F Feng L Yang S Yu Y Wang L Song W Yisimayi A Chen X Xu Y Wang P Yu L Wang J Liu L Niu X Wang J Xiao T An R Wang Y Gu Q Shao F Jin R Shen Z Wang Y Wang X Cao Y Convergent evolution of SARS-CoV-2 XBB lineages on receptor-binding domain 455-456 synergistically enhances antibody evasion and ACE2 binding. Plos Pathog. US 19 e1011868 e1011868 2023 38117863 doi:10.1371/journal.ppat.1011868 1553-7374 8wrl FULLOVERLAP SARS-CoV-2 SARS-CoV-2 0 1 2 Severe acute respiratory syndrome coronavirus 2 Human ACE2 1 1 Homo sapiens XBB.1.5 RBD 1 2 Severe acute respiratory syndrome coronavirus 2 Processed angiotensin-converting enzyme 2 Homo sapiens 0.06880432799999998 1 Homo sapiens LEVO STIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGDKWSAFLKEQSTLAQMYPLQEIQNLTVKLQLQ ALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWESWRSEVGKQLRP LYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHLHAYVRAKLMNAYPSYISP IGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNMTQGFWENSMLTDPGN VQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGFHEAVGEIMSLSAATPKHL KSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEMKREIVGVVEPVPHDETYC DPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRLGKSEPWTLALENVVGAKN MNVRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSP Q9BYF1 Spike protein S1 Severe acute respiratory syndrome coronavirus 2 Omicron/XBB.1.5 0.026656548999999998 1 Homo sapiens LEVO MPLLLLLPLLWAGALAMAARVQPTESIVRFPNITNLCPFHEVFNATTFASVYAWNRKRISNCVADYSVIYNFAPFFAFKC YGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKPSGNYNYLYRLFRKS KLKPFERDISTEIYQAGNKPCNGVAGPNCYSPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNK P0DTC2 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 5 NAG singleParticle particle 8.0 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.2 1.8 FEI FALCON IV (4k x 4k) 52.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 6M0J 3.36 FSC 0.143 CUT-OFF 226753 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_37779.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 206.848 206.848 206.848 90.0 90.0 90.0 X Y Z -3.4451075 4.3426003 0.0014388883 0.08338475 0.808 0.808 0.808 0.3 AUTHOR emd_37779_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 206.848 206.848 206.848 90.0 90.0 90.0 X Y Z -0.3924489 0.898119 0.0014655968 0.02998181 0.808 0.808 0.808 AUTHOR emd_37779_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 256 256 256 0 0 0 256 256 256 206.848 206.848 206.848 90.0 90.0 90.0 X Y Z -0.3594384 0.82969177 0.0014814789 0.029977916 0.808 0.808 0.808 AUTHOR