2024-11-06 REL PDBj PDBj PDBj 2023-10-03 2024-04-24 2024-04-24 2024-11-06 Japan Agency for Medical Research and Development (AMED) JP21am0101093 Japan Japan Agency for Medical Research and Development (AMED) JP22ama121037 Japan Japan Science and Technology JPMJCR20H8 Japan Japan Society for the Promotion of Science (JSPS) JPJSCCA20190008 Japan Japan Society for the Promotion of Science (JSPS) 20H05773 Japan Japan Society for the Promotion of Science (JSPS) JP20H05873 Japan SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state) Nomai T Anraku Y Kita S Hashiguchi T Maenaka K VIRAL PROTEIN Tsujino S Deguchi S Nomai T Padilla-Blanco M Plianchaisuk A Wang L Begum MM Uriu K Mizuma K Nao N Kojima I Tsubo T Li J Matsumura Y Nagao M Oda Y Tsuda M Anraku Y Kita S Yajima H Sasaki-Tabata K Guo Z Hinay Jr AA Yoshimatsu K Yamamoto Y Nagamoto T Asakura H Nagashima M Sadamasu K Yoshimura K Nasser H Jonathan M Putri O Kim Y Chen L Suzuki R Tamura T Maenaka K Irie T Matsuno K Tanaka S Ito J Ikeda T Takayama K Zahradnik J Hashiguchi T Fukuhara T Sato K Virological characteristics of the SARS-CoV-2 Omicron EG.5.1 variant. Microbiol Immunol 68 305 330 2024 38961765 doi:10.1111/1348-0421.13165 1348-0421 Nomai T Anraku Y Kita S Hashiguchi T Maenaka K Virological characteristics of the SARS-CoV-2 Omicron EG.5.1 variant Biorxiv US 2024 doi:10.1101/2023.10.19.563209 2692-8205 8wmd FULLOVERLAP SARS-COV-2 EG.5.1 spike glycoprotein SARS-COV-2 EG.5.1 spike glycoprotein 0 1 Severe acute respiratory syndrome coronavirus 2 0.14 Spike glycoprotein Severe acute respiratory syndrome coronavirus 2 0.138062094 1 Homo sapiens LEVO LLMGCVAETGSSQCVNLITRTQSYTNSFTRGVYYPDKVFRSSVLHSTHDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPAL PFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYQKNNKSWMESEFRVYSSANN CTFEYVSQPFLMDLEGKEGNFKNLREFVFKNIDGYFKIYSKHTPINLERDLPQGFSALEPLVDLPIGINITRFQTLLALH RSYLTPVDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTES IVRFPNITNLCPFHEVFNATTFASVYAWNRKRISNCVADYSVIYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGN EVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKPSGNYNYLYRLLRKSKLKPFERDISTEIYQAGNKPCNGVAG PNCYSPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQF GRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQT RAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSHGSAGSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTE ILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQI LPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSG WTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNHNAQALNTLVKQ LSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGK GYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGN CDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGK YEQYIASSGYIPEAPRDGQAYVRKDGEWVLLSTFLEGTKHHHHHH P0DTC2 2-acetamido-2-deoxy-beta-D-glucopyranose 0.000221208 11 NAG singleParticle particle 7.4
calcium- and magnesium-free PBS buffer.
 Quantifoil R2/2 COPPER 300 GLOW DISCHARGE AIR ETHANE 100 291 FEI VITROBOT MARK IV
blotting time 5 s and blotting force 5..
TFS KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 2.7 0.8 1.8 130000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN GIF Bioquantum 20 GATAN K3 BIOQUANTUM (6k x 4k) 5760 4092 3240 1.5 50.054 1 899573 Ab-initio reconstruction 1 C3 FOURIER SPACE 2.71 FSC 0.143 CUT-OFF cryoSPARC 4.3.1 43647 MAXIMUM LIKELIHOOD cryoSPARC 4.3.1 MAXIMUM LIKELIHOOD cryoSPARC 4.3.1 3 cryoSPARC 4.3.1 emd_37650.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 385.91998 385.91998 385.91998 90.0 90.0 90.0 X Y Z -0.38174048 0.8468601 -0.00030615693 0.016180925 1.005 1.005 1.005 0.059 AUTHOR 8IOT PDB experimental model RIGID BODY FIT REAL emd_37650_msk_1.map emd_37650_additional_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 385.91998 385.91998 385.91998 90.0 90.0 90.0 X Y Z -0.3640972 0.72557706 -0.00029704906 0.009553641 1.005 1.005 1.005 AUTHOR emd_37650_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 385.91998 385.91998 385.91998 90.0 90.0 90.0 X Y Z -0.4351063 1.0331483 0.00020046913 0.037767626 1.005 1.005 1.005 AUTHOR emd_37650_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 384 384 384 0 0 0 384 384 384 385.91998 385.91998 385.91998 90.0 90.0 90.0 X Y Z -0.49429938 1.0160587 0.0001985402 0.03781665 1.005 1.005 1.005 AUTHOR