2025-07-02 REL PDBj INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name STRUCTURE_SUMMARY em_admin em_software pdbx_entry_details _em_admin.last_update _em_software.name _pdbx_entry_details.has_protein_modification PDBj PDBj 2023-08-22 2024-05-01 2024-05-01 2025-07-02 National Natural Science Foundation of China (NSFC) 81520108019 China National Natural Science Foundation of China (NSFC) 32100976 China National Natural Science Foundation of China (NSFC) 82222042 China Structure of the human ATP synthase bound to bedaquiline (composite) Lai Y Zhang Y Gong H ATP synthase, Human, cryo-EM, Membrane protein Zhang Y Lai Y Zhou S Ran T Zhang Y Zhao Z Feng Z Yu L Xu J Shi K Wang J Pang Y Li L Chen H Guddat LW Gao Y Liu F Rao Z Gong H Inhibition of M. tuberculosis and human ATP synthase by BDQ and TBAJ-587. Nature UK 631 409 414 2024 38961288 doi:10.1038/s41586-024-07605-8 1476-4687 0006 NATUAS EMD-37243 focused EM volume
membrane domain
 EMD-37245 focused EM volume
peripheral stalk
 EMD-37244 consensus EM volume 8ki3 FULLOVERLAP human ATP synthase human ATP synthase 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 Homo sapiens ATP synthase subunit alpha, mitochondrial Homo sapiens 0.05527616 3 LEVO QKTGTAEMSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDK LIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKTRRRVGLKAPGIIPRISVREPMQTGIKAVDSLVPIG RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGSDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA PLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGS LTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAAQTRAMKQVAGTMKLELAQYREV AAFAQFGSDLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVVSQHQALL GTIRADGKISEQSDAKLKEIVTNFLAGFEA P25705 ATP synthase subunit beta, mitochondrial Homo sapiens 0.051821965 3 LEVO AQTSPSPKAGAATGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLD SGAPIKIPVGPETLGRIMNVIGEPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGG AGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGARARVALTGL TVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQAIYVPADDL TDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNIVGSEHYDVARGVQKILQDYKSLQDIIAILGMDELS EEDKLTVSRARKIQRFLSQPFQVAEVFTGHMGKLVPLKETIKGFQQILAGEYDHLPEQAFYMVGPIEEAVAKADKLAEEH SS P06576 ATP synthase subunit gamma, mitochondrial Homo sapiens 0.030207751999999997 1 LEVO ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARIYGLGSLALYEKADIKGPEDKKKHLLIGVSSDRGLCGA IHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVGRKPPTFGDASVIALELLNSGYEFDEGSI IFNKFRSVISYKTEEKPIFSLNTVASADSMSIYDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNAS EMIDKLTLTFNRTRQAVITKELIEIISGAAALD P36542 ATPase inhibitor, mitochondrial Homo sapiens 0.009540627 1 LEVO GSDQSENVDRGAGSIREAGGAFGKREQAEEERYFRAQSREQLAALKKHHEEEIVHHKKEIERLQKEIERHKQKIKMLKHD D Q9UII2 ATP synthase subunit O, mitochondrial Homo sapiens 0.020904488 1 LEVO FAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPKVAASVLNPYVKRSIKVKSLNDITAKERFSP LTTNLINLLAENGRLSNTQGVVSAFSTMMSVHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILG GMIVRIGEKYVDMSVKTKIQKLGRAMREIV P48047 ATP synthase F(0) complex subunit C1, mitochondrial Homo sapiens 0.007610954 8 LEVO DIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM P05496 ATP synthase subunit delta, mitochondrial Homo sapiens 0.015029817 1 LEVO AEAAAAPAAASGPNQMSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSG SIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE P30049 ATP synthase subunit epsilon, mitochondrial Homo sapiens 0.005790779 1 LEVO MVAYWRQAGLSYIRYSQICAKAVRDALKTEFKANAEKTSGSNVKIVKVKKE P56381 ATP synthase F(0) complex subunit B1, mitochondrial Homo sapiens 0.024658586 1 LEVO PVPPLPEYGGKVRYGLIPEEFFQFLYPKTGVTGPYVLGTGLILYALSKEIYVISAETFTALSVLGVMVYGIKKYGPFVAD FADKLNEQKLAQLEEAKQASIQHIQNAIDTEKSQQALVQKRHYLFDVQRNNIAMALEVTYRERLYRVYKEVKNRLDYHIS VQNMMRRKEQEHMINWVEKHVVQSISTQQEKETIAKCIADLKLLAKKAQAQPVM P24539 ATP synthase subunit d, mitochondrial Homo sapiens 0.018383982 1 LEVO AGRKLALKTIDWVAFAEIIPQNQKAIASSLKSWNETLTSRLAALPENPPAIDWAYYKANVAKAGLVDDFEKKFNALKVPV PEDKYTAQVDAEEKEDVKSCAEWVSLSKARIVEYEKEMEKMKNLIPFDQMTIEDLNEAFPETKLDKKKYPYWPHQPIENL O75947 ATP synthase subunit a Homo sapiens 0.024833102 1 LEVO MNENLFASFIAPTILGLPAAVLIILFPPLLIPTSKYLINNRLITTQQWLIKLTSKQMMTMHNTKGRTWSLMLVSLIIFIA TTNLLGLLPHSFTPTTQLSMNLAMAIPLWAGTVIMGFRSKIKNALAHFLPQGTPTPLIPMLVIIETISLLIQPMALAVRL TANITAGHLLMHLIGSATLAMSTINLPSTLIIFTILILLTILEIAVALIQAYVFTLLVSLYLHDNT P00846 ATP synthase subunit ATP5MJ, mitochondrial Homo sapiens 0.006673053 1 LEVO MLQSIIKNIWIPMKPYYTKVYQEIWIGMGLMGFIVYKIRAADKRSKALKASAPAPGHH P56378 ATP synthase protein 8 Homo sapiens 0.008000634 1 LEVO MPQLNTTVWPTMITPMLLTLFLITQLKMLNTNYHLPPSPKPMKMKNYNKPWEPKWTKICSLHSLPPQS P03928 ATP synthase subunit f, mitochondrial Homo sapiens 0.010804685999999999 1 LEVO ASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVLACYVLFSYSFS YKHLKHERLRKYH P56134 ATP synthase subunit g, mitochondrial Homo sapiens 0.011309226 1 LEVO AQFVRNLVEKTPALVNAAVTYSKPRLATFWYYAKVELVPPTPAEIPRAIQSLKKIVNSAQTGSFKQLTVKEAVLNGLVAT EVLMWFYVGEIIGKRGIIGYDV O75964 ATP synthase subunit e, mitochondrial Homo sapiens 0.007947215 1 LEVO MVPPVQVSPLIKLGRYSALFLGVAYGATRYNYLKPRAEEERRIAAEEKKKQDELKRIARELAEDDSILK P56385 ATP synthase-coupling factor 6, mitochondrial Homo sapiens 0.012606498999999998 1 LEVO MILQRLFRFSSVIRSAVSVHLRRNIGVTAVAFNKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLKQ MFGNADMNTFPTFKFEDPKFEVIEKPQA P18859 ADENOSINE-5'-TRIPHOSPHATE 0.000507181 3 ATP MAGNESIUM ION 2.4305e-05 5 MG ADENOSINE-5'-DIPHOSPHATE 0.000427201 2 ADP Bedaquiline 0.000555505 1 BQ1 singleParticle particle 7.4 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.2 2.4 FEI FALCON IV (4k x 4k) 50.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 8H9S 2.89 FSC 0.143 CUT-OFF 84037 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_37251.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 373.76 373.76 373.76 90.0 90.0 90.0 Z Y X -27.089587999999999 46.207560000000001 0.0076766415 1.1200194 0.73 0.73 0.73 4.0 AUTHOR