2017-07-12 REL PDBe PDBe PDBe 2017-04-17 2017-05-03 2017-05-03 2017-07-12 Nucleosome core particle Ubiquitylated at H2A Lys-13 Wilson MD Kitevski-LeBlanc J Durocher D Rubinstein JL Kay LE Kitevski-LeBlanc J Fradet-Turcotte A Kukic P Wilson MD Portella G Yuwen T Panier S Duan S Canny MD van Ingen H Arrowsmith CH Rubinstein JL Vendruscolo M Durocher D Kay LE The RNF168 paralog RNF169 defines a new class of ubiquitylated-histone reader involved in the response to DNA damage. Elife US 6 2017 28406400 doi:10.7554/eLife.23872 2050-084X EMD-3675 associated EM volume NCP-ub complex NCP-ub complex 0 1
H2AK13 disulphide ubiquitylated Nucleosome core particle
 H2AK13 ubiquitylated Nucleosome core particle 1 1
recombinant Drosophila histones wrapped with synthetic strong positioning Widom-601 DNA. Ubiquitin G76C covalently tethered to engineered K13C residue in H2A, prior to NCP reconstitution
Drosophila Escherichia coli 220 singleParticle particle 0.65 7.5
10 mM Tris-Cl 17 pH 7.5, 50 mM KCl, 1 mM EDTA
 homemade GOLD 400 GLOW DISCHARGE ETHANE-PROPANE 100 277 FEI VITROBOT MARK III
NCP-ub
FEI TECNAI F20 FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 200 2.0 25000. 34483. GATAN 626 SINGLE TILT LIQUID NITROGEN CRYO TRANSFER HOLDER NITROGEN GATAN K2 SUMMIT (4k x 4k) COUNTING 1 175 15.0 36.0 1 42343 CTFFIND 1.4 1KX5
.mrc file was generated in chimera. Model was low pass filtered to 50 angstrom
 1 C2 8.8 FSC 0.143 CUT-OFF RELION 1.4 11063 NOT APPLICABLE RELION 1.4 NOT APPLICABLE RELION 1.4 4 RELION 1.4 emd_3675.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 128 128 128 0 0 0 128 128 128 185.6 185.6 185.6 90.0 90.0 90.0 X Y Z -0.01582847 0.13095534 0.0036272337 0.015028647 1.45 1.45 1.45 0.015 AUTHOR Nucleosome core particle with ubquitin covalently tethered to H2A lysine 13