2026-10-07 REL PDBc INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin em_software _em_admin.last_update _em_software.name EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update STRUCTURE_SUMMARY em_admin pdbx_modification_feature _em_admin.last_update _pdbx_modification_feature.ref_pcm_id PDBj PDBc 2023-07-05 2024-02-28 2024-02-28 2026-10-07 Chinese Academy of Sciences 2021YFA1300403 China Chinese Academy of Sciences 2019YFA0906300 China Chinese Academy of Sciences XDA26050402 China Chinese Academy of Sciences XDB17000000 China Chinese Academy of Sciences 2020081 China Chinese Academy of Sciences JCTD-2020-06 China Chinese Academy of Sciences 31970260 China Chinese Academy of Sciences 32222007 China Li ZH Li XY Wang WD Photosysrem I, Photosynthesis, Dinoflagellate Li X Li Z Wang F Zhao S Xu C Mao Z Duan J Feng Y Yang Y Shen L Wang G Yang Y Yu LJ Sang M Han G Wang X Kuang T Shen JR Wang W Proc.Natl.Acad.Sci.USA US 121 e2315476121 e2315476121 2024 38319970 doi:10.1073/pnas.2315476121 1091-6490 0040 PNASA6 8jze FULLOVERLAP EMDB EMD-36742 associated EM volume

PSI-AcpPCI supercomplex from Symbiodinium

PSI-AcpPCI supercomplex from Symbiodinium PSI-AcpPCI supercomplex from Symbiodinium 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 Symbiodinium Chlorophyll a-chlorophyll c-peridinin-protein-complex I-7, acpPCI-7 Symbiodinium 0.021839981999999997 1 LEVO KETSASVPFLPKPKNLAGWVGGETEFDPIGFSNWFDMKWLREAELKHGRVCMMATVGFVLQPYIGAYPGVEMPADSLQAV YAAPSEAWFAFIFAAGYIESSSYNGKITQLNMFEDSDRVPGNLGWGSTRLEGMSKEESELMQLKELKNGRLAMLAFSGMV HHNIVVKGALFPLVPDGWTGPEPWAVGSIMNN(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) Chlorophyll a-chlorophyll c-peridinin-protein-complex I-6, acpPCI-6 Symbiodinium 0.019596793 1 LEVO GGYKMSKAVPFLPMSPALEGYVGAEEEGFDPMGFSLALDIRWLREAELKHGRICMLATVGWIATDLGMRLPGPAYQVSTL EAHDAMVKFGPMAQILIWLGIIEVFSFLAITNMMEGTTDRQPGDYGLRRLYPKDEEGQYEMQLKELRNGRLAMLAFSGIV TTAVLTGRTWPF(UNK)(UNK)(UNK)(UNK)(UNK) Photosystem I unk Symbiodinium 0.006656196 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) Photosystem I unk Symbiodinium 0.011166757 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK) Chlorophyll a-chlorophyll c-peridinin-protein-complex I-8, acpPCI-8 Symbiodinium 0.024560145 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)HPKHMLVAGVRGYEMEWQPIPGDAVKYPKP NSEEMFKTMIGADVETGGEAWDPLGFHKLFDRNFDFNMLPVYPHVQWLREAEIKHGRVCMLAFIGCFAQAGYHIGSYPVQ PDWSKALAECYASPTGAVGLFQISVLIGWIEGKNYNGDAWVGMSEKEPGDLGFDPAGFTKNPDFDLKKAQLQEIKNGRLA MVGCASIAANHFIPGSVPLLTGFY Chlorophyll a-chlorophyll c-peridinin-protein-complex I-10, acpPCI-10 Symbiodinium 0.020093357 1 LEVO EFAGGLIGGQSAFASQEYNFDPLGLAEKFPEQLPFFREAELKHGRIAMLAWVGLVVPEFVRIPGPEKCWQASAVDAHSAC V(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)GALTQVFIFCGTLEICGTWAKMNPM(UNK)(UNK)(UNK)GLTMENAGDYRLGVN FLPDEPEKVKEMKLKELKNGRLAMLAFGGAITQATLTGSGFPWLY Photosystem I PsaC Symbiodinium 0.009425731 1 LEVO SHAVKIYDTCIGCTLCVRACPTDVLEMVPASINAAKQVASSPRVEDCVGCKRCETACPTDFLSIRVYLQDNEETQYSLGL DLVDWS Photosystem I PsaD Symbiodinium 0.024878784999999997 1 LEVO VVAEAIPRPEDLLDSPKFPMFEGSTGGYMSRSTRERHAITWTAKGQAKFEMPTGGFAIMNQGENLCYFRKKEQCIALGKQ LRKMKIENYKIYRLKKDGTVIFMHPADGVFPEKVNKGRVQVNGRPFTIRGNPQQSELKFTKYQGKGYEADPLTTMFVKAR VMAFADVPNLFALPQPNMDELVPAEEVDKYTRQEYTTRMMEALKRVQDDRAAKAAKSL Photosystem I PsaE Symbiodinium 0.008266334 1 LEVO PWVGPKKGSWVKILRPESYWFQQRGQVVNVNQKPEVKYPVTVKFDSVNYANVNTNGYALWEVIEAPAPGPGEV Photosystem I PsaF Symbiodinium 0.020609658 1 LEVO AKPLEMFGGVDIDLEDTPAHWTIKASPVLEPCKDNKKFHKKLKDELYKVKKNQQKFAEGSAAYARFNKKIKMIELRETAY GDRLCGKKDGLPRTIATGEWNVRGSAMWPAAIFLYIAGWIGWAGRSYLIRTNDAAKEINIDVPLAVTCMASGFSWPVAAW QEIVNGEMAVPNDQIHNGGPWNQS Photosystem I PsaR Symbiodinium 0.015221271 1 LEVO YTETVADERLFEQVYLQYTSEYLKGPLYWHPDKLQGWLPDYPGTPMIKEGKYTSHVIGNLKAFSSNELAFLSMLFFGVGL YGNLQFNFYDPQWAKVDAGGFFNVSYIVESFLLPISFFMHIACYIQRQNGK A0A812Q823 Photosystem I PsaI Symbiodinium 0.013699558999999998 1 LEVO KYGDQRKFAAVLVPLTTLVFPAVAMGMFVLYSFQEDAFWRIVPGTKRARELDEAWREHPLFANSKDPLDGLINPDDYEKG LEEAWERAKPAGSTVTVKDKLKQLSKQNNPHWESWRAMS A0A812IJ75 Photosystem I PsaJ Symbiodinium 0.011153527 1 LEVO AETEEGLIIKPEEAGKITSRDKNNNPPRIVVKTNDWDIPEYQLSTGASNQVSYITPVVESEDIKAWLSLNVNFFSIIILF TVGGLIEIQRFFPDTLYW A0A812LLR4 Photosystem I PsaL Symbiodinium 0.027708895 1 LEVO KIAYLQDIPRTIVEKDALELILKNTPKEQWENPPEDSYLYTVKAFAEMYGPGKATKMGWWDYYRLKMDMPDTTRLSSERE LQEIEEYEKLMMSGKVPFAVPGPSGYFFTGFVTQWKGKEPFAGDQVITLTENGLFAKQFLSALAFYREGLKPWQRGLEIG MAHGYFLIGPFTSLGPLRNTPEAATVGLLCGCAIVGIVSIGGLIFGSTIKPTRFDKDGDKPGAGFIEMINWHAVGGLGGA GFAHALITVF Photosystem I PsaM Symbiodinium 0.008527976 1 LEVO RVPGGKRTQELGLVIPMADEDGLTDGQVAGLFVIALVVFISAMDLAKTMYNGINPAKFKTSKGKGYISPLVKRYIENGF A0A812M556 Photosystem I PsaA Symbiodinium 0.075785336 1 LEVO IFRYINTTLWAKAGHFNKALSKGAKTTTWIWNLHDYAHDFDIQQRSTGLIARKVFSSNLAHLSLVFFWISGMHLHGAYLS NYDIWLKDPKSITPSSHLAYSLIGQDILNSYTSEYFSGITITSGFFQLYRSEGIITQSQLKYACATSLIATLICLSGSYL HMQLMSKFTSFYKKFQSLSQDHLIIIFGSRSTSLSAHQIHKMLPANPLLDSGISKPSILQVISNSLSYTLALFSTNLSST GKLLNPSTRSVFLSQVAAHHKTTGVVFITLGLIRFLTMYKSQFSILTSYIDYHIVLSINLALIASLSIIVADHLTRTPIY PHKSTSYPTILCLSIHHAWLSGFLIIGSGAHASIFNLLGSPTSEIRHRDPIYSHLIWVCIAIGLHSFSLYCHNDTLEALG RPEDIFHDNSIQLKAIFAKQSFLRAELQPDIEMLDKKIIRITQELGTADFIVHHIHAFTIHVTLLILSKGVLYARNSRFV SDKLELGFTYPCDGPGRGGTCQISPWDHLFSAVFWMYNCLNVVTFHYFWKMQSDVWGFVSIQKHISHYSQGDFSVNSITI NGWLRNLLWSEASQVIQSYALSSICPYGFIFLIGHFIWAFSLMFLFSGRAYWQELIESILWSHHKLKIIPHIQPRALSIS QGRAVGFIHYTLGGIGSTWAFIISRLLVLT Photosystem I PsaB Symbiodinium 0.074438906 1 LEVO GRCASSRYLQVLGSIHDIECGFGIDNTLSLNLQIFTAHWGHLTIILIWVSSNLYHIASNANYSLWVKNPIPSMPIAHNIW DPHFTNSTSTPYSHTIITTILIAYSGIYNQLYTSGFNTINQIYKTTFTFSCLAVISILLAKIHINTHSELLHKLASHTSQ IPSFFQLLYFLDVAISSVNIRFNFHTGILVGLFSIGYTGHLLDITIPASRAPLIHTSPSYLTFFGGLKSNTSSLYLTDIA HHHLAIGIISILTGHLYSSFRAALGTYIRDILYTSHLTHSIKSLHLALSLILASCTPLTSTTAQHIYSLTPYFYLSYDHI YSTALYVHHSYITSFLAIASHAHTAITLVRDWVAPLEQESSSKQIRIHTHKAAIISHLSWVSLWLGFHTLAVYSHNDTCI AFNSPSKQILIEASNGQLIQQASGKALYGTINSINNYNKSFDSFIHPISPGDLYVHHAIALGLHITVLILLKGGLEARGS KLMPDKMEHSFGFSCDGPGRGGTCDISAWDSFYLATFWMLNSNAWISFYFHYKHLTPRQFSESSTYLESWFRDYLWFNST PLIHGYSTLGANDLSVQSWSFLLTHLAWASGFMFLISWRGYWQELIDIILYIHLKTPILINLWNGDIYTPLALSIVQARF IGLVHFSTGLILTYPPFIIGATS Chlorophyll a-chlorophyll c-peridinin-protein-complex I-11, acpPCI-11 Symbiodinium 0.021264883000000002 1 LEVO (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)VKMSPSVPYLPYPERLEGWVGGEKGFDPLRTSDIIDVYWLREAELKHGRICMLATLGWIS VDAGWRFEAEMFQGVSVINAHNKMVEMGVMQQMLSIVGVCEIFSLYLIKEGLLGKIQRKAGDYFIGKNFLPKEEDKAKDM QLKELENGRLAMLAFSGICTQANLFPESHFPY Chlorophyll a-chlorophyll c-peridinin-protein-complex I-9, acpPCI-9 Symbiodinium 0.017493844 1 LEVO FENELGVQAPTGFFDPLGLSSDGSIDNFKRRRASEIKHGRVAMLATMGYMTPEITGKFPGYLSYSQSIKFADVPNGLAAM SKVPVLGWAQVAAYGAVCELSQDQSPGTPGAAGDFGF(UNK)(UNK)(UNK)(UNK)(UNK)KVITSEDEETLKRKLNSE LANGRLAMMAIIGLFFQDGLTGGAY Chlorophyll a-chlorophyll c-peridinin-protein-complex I-2, acpPCI-2 Symbiodinium 0.01933507 1 LEVO FEGELGVTPPMGYFDPLGLSSDGDKKTFIRRRKSELKNGRVAMWACMGWIVPEWYRFPGELSPSSGLKFSEIPNGMAALK ALPTEAWAQMGAFVALLELGPLWQDESRAPGDFKTCAKYGFPMFFVGGREGSDSDPVKNQYSLNSEINNGRLAMMAITGM VFQNGITGTTGPEMWA Chlorophyll a-chlorophyll c-peridinin-protein-complex I-12, acpPCI-12 Symbiodinium 0.017109432 1 LEVO FESELGVQAPTGFWDPLGFAKDGSMKAFKRRRASEIKHGRIAMLATMGYITPEITGKFPGYLSPSTLLKYDDIPNGLGAI SKVPALGWAQIFVYCGYAELSQDQTPGSPGAEGNFGFKVLTSSDPDSLEKKLASEIANGRLAMMAFTGMATQDGLTGSAW Chlorophyll a-chlorophyll c-peridinin-protein-complex I-3, acpPCI-3 Symbiodinium 0.022912515999999997 1 LEVO REAPKVLAGTGGPLPESFWDPAGFTNNKTDEELLFYRAAELKHGRIAMAAVVGWFTNASGFHYLGDLWLKKPASDNPIEA FNQLSLLGVFQMVFFIGCLEWLTTVPCPPPKDAPWDVIGMSDVLEEDTDENPMAEYKKIQMQELNNSRLAMVAIIGLIVQ ATTTG(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) (UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK) Chlorophyll a-chlorophyll c-peridinin-protein-complex I-5, acpPCI-5 Symbiodinium 0.020585494 1 LEVO ARRELAVAYEDAGIDLMDNGKFAQGLVGAEAAFGRYEFDPIGFSKYTELVPWFREAELKHGRIAMLAWLGLVVPDFVRIP GEAYSFEAVPRVIDAHDALNADAGPNFQIILFISIVELCCAKKVFEWNSVETAGDYNLTRLFPEDDEAQKQMRIAELKNG RLAMIAFGGAVTQAVITGKPFPWTF Chlorophyll a-chlorophyll c-peridinin-protein-complex I-4, acpPCI-4 Symbiodinium 0.019381953 1 LEVO FAGGLTGSDYGGFGGKYEWDPVGFSTRWPEHLAWYREAELKHGRIAMLAFAGLLAPDLFRLPWAEFQDSSLDFANAHDKF VAG(UNK)(UNK)(UNK)(UNK)(UNK)FGPMWWGFIACGGIEYQRFRKLGLGMEGLTLENAGNLGWFDLPKNSEERLFY ETAELKNGRLAMLAVSGIFTAGIFWDQHHFPFI Chlorophyll a-chlorophyll c-peridinin-protein-complex I-13, acpPCI-13 Symbiodinium 0.017119342 1 LEVO FENELGVQAPVGFWDPVGFTADGNVASFRRRRTVELKHGRISMLAAMGYMTPEITGKFPGYLSPSTLLKYDDIPNGLGAI SKVPALGWAQIFVYCGYAELSQDQTPGSPGAEGNFGFKVLTSSDPDSLEKKLASEIANGRLAMMAFTGMATQDGLTGSAW Chlorophyll a-chlorophyll c-peridinin-protein-complex I-15, acpPCI-15 Symbiodinium 0.017422853999999998 1 LEVO ESERGAQPPFGFWDPLGLSADGDVATFKRRRASEIKHGRIAMLAAMGYMTPEITGKFPGYLSPSTGVKYADIPNGLAAIS KVPVVGWLQIFAWTAVCELWEDQVPGTPGHEGEFCFKAFKVTSDAPETRETKLASELANGRLAMMAIIGLFFQDGLTGSA Y Chlorophyll a-chlorophyll c-peridinin-protein-complex I-14, acpPCI-14 Symbiodinium 0.017355807 1 LEVO FENELGVQAPTGFWDPLGFAKDGSMKAFKRRRASEIKHGRIAMLATMGYITPELTGKFPGLLSPSMGLKYEDIPNGLGAI SKVPAVGWAQILAYTFYCEQSQDQSEGSAGEAGDFGFKVLTSKDEEGLKRKLNSELANGRLAMMAIIGMFFQDGLTGSAW (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol 0.000582855 43 DD6 [(1~{S},5~{R})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate 0.000642907 9 UIX CHLOROPHYLL A 0.000893489 201 CLA Chlorophyll c1 0.000610941 26 KC1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 7 DGD 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 9 LMG PERIDININ 0.0006308099999999999 28 PID 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL 0.0007951159999999999 1 SQD IRON/SULFUR CLUSTER 0.00035163999999999996 3 SF4 BETA-CAROTENE 0.000536873 12 BCR PHYLLOQUINONE 0.000450696 2 PQN 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 1 LHG singleParticle particle 7.5 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.0 GATAN K3 BIOQUANTUM (6k x 4k) 60.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 2.99 FSC 0.143 CUT-OFF 46321 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_36742_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 532.48 532.48 532.48 90.0 90.0 90.0 X Y Z -1.0102949 1.9187453 0.0015703273 0.12129924 1.04 1.04 1.04 AUTHOR ::::EMDATABANK.org::::EMD-36742:::: emd_36742_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 512 512 512 0 0 0 512 512 512 532.48 532.48 532.48 90.0 90.0 90.0 X Y Z -0.9727886 1.7139386 0.0015509836 0.12108408 1.04 1.04 1.04 AUTHOR ::::EMDATABANK.org::::EMD-36742::::