2025-02-12 REL PDBj PDBj PDBj 2023-05-28 2024-03-27 2024-03-27 2025-02-12 Wellcome Trust United Kingdom Mishra RK Sharma P Hussain T Protein Synthesis Machinery, Eukaryotic Ribosome, Plant, TRANSLATION Mishra RK Sharma P Khaja FT Uday AB Hussain T Structure UK 32 562 2024 38458197 doi:10.1016/j.str.2024.02.006 0969-2126 2005 STRUE6 Uday AB Khaja FT Acta Crystallogr., Sect. D: Biol. Crystallogr. DK 74 531 544 2018 0907-4449 0766 ABCRE6 EMD-36331 other EM volume 8jiw FULLOVERLAP The large subunit of wheat Ribosome The large subunit of wheat Ribosome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 Triticum aestivum 18S rRNA Triticum aestivum 0.5843754999999999 1 UACCUGGUUGAUCCUGCCAGUAGUCAU(A2M)UGCUUGUCU(OMC)AAAGAUUAAGCCAUGCAUGUGCAAGUAUGAACCA AUUUGAACUGUGAAACUGCGAAUGGCUCAU(PSU)AAAUCAG(PSU)UAUAGUUUG(PSU)U(OMU)GAUGGUACGUGCU ACUCGGAUAACCGUAGUAAUUCUAG(A2M)GCUAAUACGUGCAACAAACCCCGACUUCUGGGAGGGGCGCAUUUA(PSU) UAGAUAAAAGGCUGACGCGGGCUCUGCUCGCUGAUCC(OMG)AUGAUUCA(PSU)GA(PSU)AACUCGACGGAUCGCACG GCCUUCGUGCCGGCGACGCAUCA(PSU)UCAAA(PSU)UUCUGCCCUAUCAACUUUCGAUGGUAGGAUAGGGGCCUACCA UGGUGGUGACGGG(PSU)GACGGAGAAUUAGGGUUCGA(PSU)UCCGGAGA(OMG)GGAGCCUGAGAAACGGCUACCACA U(OMC)CAAGGAAGGCAGCAGGCGCGC(A2M)AAUUACCCAA(PSU)CCUGACACGGGGAGGU(A2M)GUGA(OMC)AAU AAAUAACAAUACCGGGCGCAUUAGUGUCUGGUAAUUGGAAUGAGUACAAUCUAAAUCCCUUAACGAGG(A2M)UCCAUUG GAGGGCAAGUCUGGUGCCAGCAGCCGCGGUAA(PSU)UCCAGCUCCAAUA(OMG)CGUAUA(PSU)UUAAGUUG(OMU)U GCAGUU(A2M)AAAAGCUCGUAG(PSU)UGGACCUUGGGCCGGGUCGGCCGGUCCGCCUCACGGCGAGCACCGACCUACU CGACCCUUCGGCCGGCAUCGCGCUCCUAGCCUUAAUUGGCCGGGUCGUGUUUCCGGCAUCGUUACU(PSU)UGAAGAAA (PSU)UAGAGUGCUCAAAGCAAGCCAUCGCUCUGGAU(A2M)CAUU(A2M)GCAUGGGA(PSU)AACAUCAUAGGAUUCC GGUCCUAUUGUGUUGGCCUUCGGGAUCGGAGUAAUGAUUAAUAGGGACAGUCGGGGGCAUUCGUAUUUCAUAGUCAGAGG UGAAAU(PSU)CUUGGAUUUAUGAAAGACGAACAACUGCGAAAGCAU(PSU)(PSU)GCCAAGGAUGUUUUCAUUAAUCA AGA(A2M)CGAAAGUUGGGGGCUCGAAGACGA(PSU)CAGAUACCG(OMU)CCUAGUCUCAACCA(PSU)AAACGAUGCC GACCAGGGAUCGGCGGAUGUUGCUUAUAGGACUCCGCCGGCACCUUAUGAGAAAUCAAAGUCUUUGGG(PSU)UCCGGGG GGAGUA(PSU)GGUCGCAAGGCUGAAACUUAAAGGAAUUGACGGAAGGGCACCACCAGGCGUGGAGCCUGCGGCUUAAUU UGACUCAACACGGGGAAACUUACCAGGUCCAGACAUAGCAAGGAUUGACAGACUGAGAGCUCUUUCUUGAUUCUAUGGGU GGUGGUGCAUGGCCGUUCUUAGUUGGUGGAGCGAUUUGUCUGGUUAAUUCCGUUAACGAACGAGACCUCAGCCUGCUAAC UAGCUAUGCGGAGCCAUCCCUCCGCAGCUAGCUUCUUAGAGGGACUAUCGCCGUUUAGGCGACGGAAGUUUGAGGCAAUA ACAGGUCUGUGAUGCCCUUAGAUGUUCUGGGCCGCACGCGCGCUACACUGAUGUAUUCAACGAGUAUAUAGCCUUGGCCG ACAGGCCCGGGUAAUCUUGGGAAAUUUCAUCGUGAUGGGGAUAGAUCAUUGCAAUUGUUGGUCUUCAACGAGGAAUGCCU AGUAAGCGCGAGUCAUCAGCUCGCGUUGACUACGUCCCUGCCCUUUGUACACACCG(OMC)CCGUCGCUCCUACCGAUUG AAUGGUCCGGUGAAGUGUUCGGAUCGCGGCGACGGGGGCGGUUCGCCGCCCCCGACGUCGCGAGAAGUCCAUUGAACCUU AUCAUUUAGAGGA(A2M)GGAGAAGUCGUAACAAGGUUUCCGUAGGUG(MA6)(MA6)CCUGCGGAAGGAUCAUUG XR_006452643.1 40S ribosomal protein SA Triticum aestivum 0.032926117 1 LEVO MAAEGGGVRALSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQMAARVIVAIENPQDIIVQ SARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYV DIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWEIMVDLFFYRDPEEAKELEEDEALGAPEYAAVAEYTAPAGDT WGAEWPGAAAPAAAVEAPAGAEWTGAPAPAADGWDAVAAPAPTGWEQGSAPAPAAAPAATPNWE A0A3B6AV88 40S ribosomal protein S3a Triticum aestivum 0.030043955 1 LEVO MAVGKNKRISKGRKGSKKKAVDPFTKKQWYDIKAPLLFTSRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQA YRKIRLRAEDVQGMNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQ IRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVG VKLDRPADGDEVIPGAEEVAAAE A0A3B6IU74 S5 DRBM domain-containing protein Triticum aestivum 0.030482432 1 LEVO MADRGGERGVGERGGDRGGFGRGFGRGGRGDRGGRRGGRRGPRQEEEKWVPVTKLGRLVKEGRFTKMEEIYLHSLPVKEH QIVETLCPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDSNGHVGLGVKCAKEVATAIRGAIILAKLSIVPVRRGYWGN KIGQPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLMKTYGFLT PDFWRETTFTKAPYQEFTDILAKPTKALMLDAPAEKIEA A0A3B6N0N5 40S ribosomal protein S4 Triticum aestivum 0.030008111 1 LEVO MARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREVQSILMQRHIMVDGKVRTDK TYPAGFMDIISIPKTGENYRLLYDTKGRFRLHSVRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTI KLDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGTFETIHVEDAQGHQFATRLGNVFTIGKGTKPWVSLPK GKGIKLTIIEEQRKRDAAAQAAAKA A0A1D5SLI4 40S ribosomal protein S6 Triticum aestivum 0.028522608999999997 1 LEVO MKLNIANPTTGCQKKVEIDDDQKLRNLYDKRISQEVVGDLLGEEFKGYIFKIMGGCDKQGFPMKQGVLTSGRVRLLLHRG TPCFRGFGRRNGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTDTEKPRMRGPKRASKIKKLFNLGKDDDVRSYVN TYRRTFLNKKGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRDRRSESMAKRRSKLS AATKAPAASA W5C8N6 40S ribosomal protein S7 Triticum aestivum 0.022297891 1 LEVO MYTARKKIQKDKGVEPSEFEDTVAQAFFDLENGNQELKSDLKDLYINTAIQMDVVGNRKAVVIHVPYRLRKPFRKIHVRL VRELEKKFSGKDVVFVATRRIVRPPKKGSAVQRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKER NNTEYKLETFSAVYRRLCGKDVVFEYPVTETA Q5I7K2 40S ribosomal protein S8 Triticum aestivum 0.025185838 1 LEVO GISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLD VVYNSSNNELVRTQTLVKNAIVQVDAAPFKQWYLTHYGVEIGRKKKAAAAAKKDAAEGQESEVAAAATEEAKKSNNVQRK LEKRQQGRTLDSHIEEQFSGGRLLACISSRPGQCGRADGYILEGKELEFYMRKLQKKKGKGATA A0A3B6C6G0 30S ribosomal protein S4, chloroplastic Triticum aestivum 0.022534111 1 LEVO MVHVNFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARHLLTLDEKNPRRIFEGAALLR RMNRYGLLAEGQDKLDYVLALTAENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGRQIVNVPSFMVRVESEKHIDF SLTSPFGGGPAGRVKRKNQKKASGGGDAGGDEEEE W5FPA7 40S ribosomal protein S11 N-terminal domain-containing protein Triticum aestivum 0.018135344 1 LEVO MAEQTEKAFLKQPKVFLCSKKTTKGNNKPGKEGNRFWKSVGLGFKTPKEAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSA KMNRTIIVRRNYLHYVKKYQRYEKRHSNIPAHISPCFRVREGDHVIIGQCRPLSKTVRFNVLKVVPAGSKSGAVKKAFTG A A0A3B6QHW3 Ribosomal protein S13/S15 N-terminal domain-containing protein Triticum aestivum 0.017132302999999998 1 LEVO MGRMHSRGKGISSSALPYKRTPPSWVKTAVADVDELITKAAKKGQMPSQIGVLLRDQHGIPLVKSVTGSKILRILKAHGL APEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA W5I035 40S ribosomal protein S14 Triticum aestivum 0.016398818 1 LEVO MSSKRKTREPKEENVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQD VATRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL A0A3B6SS17 40S ribosomal protein S17 Triticum aestivum 0.01647909 1 LEVO MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILQSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQEEERER RMDFVPEKSALEVDEIRVDKETMDMLAFLGMADLPGVERAPEATSAAAPYRQPFNGPRGGNRA A0A3B5XY60 40S ribosomal protein S21 Triticum aestivum 0.009194349 1 LEVO MQNEVGDMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFVRAQGDADGSLDRLWQKRKAEIK QL W5EL62 30S ribosomal protein S8, chloroplastic Triticum aestivum 0.014815362999999998 1 LEVO MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFD VGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY E2F3W4 40S ribosomal protein S23 Triticum aestivum 0.015696476 1 LEVO MGKTRGMGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKKI AAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS W5FV77 40S ribosomal protein S24 Triticum aestivum 0.015739685 1 LEVO MADAKTAPAVTLRTRKFMTNRLLSRKQFVLEVIHPGRANVSKADLKERLAKIYEVKDSNCIFVFKFRTHFGGGKSTGFGL IYDNLEAAKKFEPKYRLIRNGLATKVEKSRKQIKERKNRTKKIRGVKKTKAGDAKKK A0A3B6PK86 40S ribosomal protein S26 Triticum aestivum 0.015319789 1 LEVO MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIH AHIVRVRSRENRRNREPPQRFRRRDDGPRPGQGGPPRAGGPGGAPAGAGAVPGAPAPRV A0A3B6KQB8 40S ribosomal protein S27 Triticum aestivum 0.009583195 1 LEVO MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCS FRRKGD W5HZ68 40S ribosomal protein S30 Triticum aestivum 0.006934164 1 LEVO MGKVHGSLARAGKVRGQTPKVAKQDKKKQPRGRAHKRIQYNRRFVTAVVGFGKKRGPNSSEK A0A3B6S9M7 60S ribosomal protein L41 Triticum aestivum 0.0034454369999999995 1 LEVO MRAKWKKKRMRRLKRKRRKMRQRSK P62124 KH type-2 domain-containing protein Triticum aestivum 0.025398729999999998 1 LEVO MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFP ENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS GQPVNEYIDAAVRHVLLRQGVLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEEDELRPPALVEV W5I1R7 Ribosomal protein S7 domain-containing protein Triticum aestivum 0.022350879 1 LEVO MAVVEPVPGGDVKLFNRWTFEDVQVSDISLNDYLAVTSMKHYTFLPHSAGRYSAKRFRKAQCPIIERLTNSLMMHGRNNG KKIMAVRIIKHTMEIIHLLTDANPIQIIVDAIINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFR NVKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR W5D067 Plectin/S10 N-terminal domain-containing protein Triticum aestivum 0.020463965 1 LEVO MIISKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEFLRNFL NLPSEIVPATLKKSARPPGRPLGSGPPGDRPRGPPRFEGDRPRYGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSG GGGFGRGGGGGFGRGGGGGGGFGASPME W5AUH7 40S ribosomal protein S15 Triticum aestivum 0.017295374999999998 1 LEVO MADVDVDPEVAAAGPKKRTFRKFSYRGVDLDALLDMSTEDLVQLFPARPRRRFSRGLKRKPMALVKKLRKAKSEAPAGEK PEQVRTHLRNMIIMPEMIGSVVGIYNGKCFNQVEIKPEMIGHYLAEFSLSYKPVKHGRPGIGATHSSRFIPLK A0A3B6LV48 40S ribosomal protein S16 Triticum aestivum 0.016870991999999998 1 LEVO MAAVLTRPTPGTVQCFGRKKTAVAVAYCKPGRGLIKVNGAPIELIRPEMLRLKAFEPILLAGRSRFKDIDMRIRVRGGGK TSQIYSIRQAIAKSLVAYYQKYVDEAAKKEVKEIFARYDRTLLVADPRRCEPKKFGGRGARARFQKSYR A0A3B6HX49 40S ribosomal protein S18 Triticum aestivum 0.017676604999999998 1 LEVO MSLSAGEEFQHILRVLNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVP DWFLNRKKDYKDGRFSQVVSNAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHTKTTGRRGKTVGVSKKR A0A3B6TWW5 40S ribosomal protein S19 Triticum aestivum 0.017097604 1 LEVO MATVPAPAAETAASTARTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPSDADWYYIRAASMARKIYLR QGIGIGGFQKIYGGRQRNGSRPPHFCKSSGAVSRNILQELQKMGIIDVDPKGGRLITSQGRRDLDQVAGTVPAEF W5FWF5 Ribosomal protein S10 domain-containing protein Triticum aestivum 0.013036148999999999 1 LEVO MKSGKAGFEGPQEAQHRIRITLSSKSVKNLEKVCSDLVRGAKDKLLRVKGPVRMPTKVLNITTRKSPCGEGTNTWDRFEM RVHKRVIDLVSSPDVVKQITSITIEPGVEVEVTISDQ A0A3B6K9W5 40S ribosomal protein S28 Triticum aestivum 0.007477787 1 LEVO MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESEREARRLR W5E8X2 40S ribosomal protein S29 Triticum aestivum 0.0064174919999999995 1 LEVO MGHSNVWNSHPKNYGPGSRVCRVCGNSHGLIRKYGLMCCRQCFRSNAKDIGFIKYR A0A1D5ZKM9 Mitogen-activated protein kinase Triticum aestivum 0.036314793 1 LEVO MANMQESLALVGTMRGHNDVVTAIAAPIDNSPYIVSGSRDKSLLVWDLTNPVPSLGDGTVGTDYAVPFRRLTGHGHFVQD VVISSDGQFALSGSWDGELRLWDLSTGLTTRRFVGHTKDVISVAFSVDNRQIVSASRDNTIKLWNTLGECKYTIGGDMGG GEGHTGWVSCVRFSPNIQQPTIVSGSWDKTVKVWNLTNCKLRSTLAGHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLSE GKRLYQLEAGSIIHALCFSPNRYWLCAATEESVKIWDLESKHVVQDLKPEVQVSKNQMLYCTSLSWSADGSTLYTGYTDG TIRVFKIQAGFAGYA A0A3B5Z4Q0 40S ribosomal protein S25 Triticum aestivum 0.01086064 1 LEVO MAPKKEKAPAASSKPAKSGGGKQKEKVNNAVLFDQATYDKLLTEVPKYKQITPSVLSERLRINGSLARRAIKDLMERGLI RMVSIHSSQQIFTRATNT A0A3B6HY18 POTASSIUM ION 3.9098e-05 16 K MAGNESIUM ION 2.4305e-05 70 MG ZINC ION 6.5409e-05 1 ZN singleParticle particle 7.6 Quantifoil R2/2 COPPER 400 CARBON CONTINUOUS ETHANE 100 289 FEI VITROBOT MARK IV

The sample is the small subunit of wheat ribosome

FEI TITAN KRIOS OTHER OTHER FIELD EMISSION GUN 300 2.7 1.5 3.0 75000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) 44.6 1 4V7E 2.88 FSC 0.143 CUT-OFF 105563 NOT APPLICABLE NOT APPLICABLE emd_36332_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 449.40002 449.40002 449.40002 90.0 90.0 90.0 X Y Z -0.94402677 2.6373143 0.0002205894 0.12604392 1.07 1.07 1.07 AUTHOR ::::EMDATABANK.org::::EMD-36332:::: emd_36332_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 420 420 420 0 0 0 420 420 420 449.40002 449.40002 449.40002 90.0 90.0 90.0 X Y Z -0.9465721 2.4345806 0.0002257355 0.12585443 1.07 1.07 1.07 AUTHOR ::::EMDATABANK.org::::EMD-36332::::