Atomic structure of wheat ribosome reveals unique features of the plant ribosomes

2024-05-22 REL PDBj PDBj PDBj 2023-05-28 2024-03-27 2024-03-27 2024-05-22 Wellcome Trust United Kingdom Atomic structure of wheat ribosome reveals unique features of the plant ribosomes Mishra RK Sharma P Hussain T Protein Synthesis Machinery, Eukaryotic Ribosome, Plant, TRANSLATION, RIBOSOME Mishra RK Sharma P Khaja FT Uday AB Hussain T Cryo-EM structure of wheat ribosome reveals unique features of the plant ribosomes. Structure UK 32 562 2024 38458197 doi:10.1016/j.str.2024.02.006 0969-2126 2005 STRUE6 Uday AB Khaja FT Real-space refinement in PHENIX for cryo-EM and crystallography Acta Crystallogr., Sect. D: Biol. Crystallogr. DK 74 531 544 2018 0907-4449 0766 ABCRE6 8jiv FULLOVERLAP The large subunit of wheat Ribosome The large subunit of wheat Ribosome 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 Triticum aestivum 25S rRNA Triticum aestivum 1.098269625 1 GCGACCCCAGGUCAGGCGGGACUACCCGCUGAGU(PSU)UAAGCAUAUAAA(OMU)AAGCGGAGGAGAAGAAACU(PSU) ACAAGGAUUCCCCUAGUAACGGCGAGCGAACCGGGAGCAGCCCAGCUUGAGAAUCGGGCGGCUGUGCCGUCCGAA(OMU) UGUAGUCUGGAGAGGCGUCCUCAGCGACGGACCGGGCCCAAGUCCCCUGGAAAGGGGCGCCUGGGAGGGUGAGAGCCCCG UCCGGCCCGGACCCUGUCGCCCCACGAGGCGCCGUCAACGAGUCGGGUUGUUUGGGAAUGCAGCCCAAAUCGGGCGGUAG ACUCCGUCCAAGGCUAAAUACAGGCGAGAGACCGAUAGCGAACAAGUACCGCGAGGGAAAGAUG(A2M)AAAGGACU (PSU)UGAAAAGAGAGUCAAAGAGUGCUUGAAAUUGCCGGGAGGGAAGCGGAUGGGGGCCGGCGAUGCGCCCCGGCCGUA UGCGGAACGGCUCUUGCUGGUCCGCCGCUCGGCUCGGGGUGUGGACUGUUGUCGGCCGCGCCGGCGGCCAAAGCCCGGGG GCCCUAGGUGCCCCCGGUGGCCGUCGUCGGCACGGCCGGUACCCGCGCGCCUAAAGGCGUGUCCCUCGGGGCACUGCGCU GCAACGGCCUGCGGGCUCCCCAUCCGACCCGUCUUG(1MA)AAC(A2M)CGGACCAAGGAGU(OMC)(OMU)GACAUGCG UGCGAGUCGACGGGUUCUGAAACCUGGGAUGCGCAAGGAAGCUGACGAGCGGGAGGCCCUCACGGGCCGCACCGCUGGCC GACCCUGAUCUUCUGUGAAGGGUUCGAGUUGGAGCACGCC(OMU)GUCGGGACCC(OMG)A(A2M)AGAUGGUGA(A2M) C(PSU)AUGCCUGAGCGGGGCGAAGCCAGAGGAAACUCUGGUGGAGGCUCGAAGCGAUACUG(A2M)CGUGCAAA(PSU) CGUUCGUCUGACUUGGGUAUAG(OMG)GGCGAAAGACUAAUCGAACCAUCUAGU(A2M)GCUGGUUCCCUCCGAAGUUUC CC(PSU)CAGGAUAGCUGGAGCCCAUUACGAGUUCUA(PSU)CAGGUAAAGCCAA(PSU)GAUUAGAGGCAUUGGGGACG CAACGUCCUCGACCUAU(PSU)CUCAAACUU(PSU)AAA(OMU)AGGUAGGAUGGCGCGGCUGCUUCGGUGAGCCGUGCC AUGGAAUCGGGUGCUCCAAGUGGGCCAU(PSU)(PSU)(PSU)UGGUAAGC(A2M)GAACUGGCGAUGCGGGAUGAACCG GAAGCCGGGUUACGGUGCCCAACUGCGCGCUAACCUAGAACCCACAAAGGGUGUUGGUCGAUUAAGACAGCAGGACGGUG GUCAUGGAAGUCGAAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCCGAAAAUGGAUGGCGCUG AAGCGCGCGACCCACACCCGGCCAUCUGGGCGAGCGCCAUGCCCCGAUG(A2M)GUAGGAGGGCGCGGCGGCCGCUGCAA AACCCGGGGCGCGAGCCCGGGCGGAGCGGCCGUCGGUGCAGAU(OMC)UUGGUGGUAGU(A2M)(OMG)CAAAUAUUCAA A(PSU)GAGAA(OMC)U(PSU)UGAAGGCCGAAGAGGAGAAAGGUUCCAUGUGAACGG(OMC)ACUUGCACAUGGGUAAG (OMC)CGAUCCUAAGGGACGGGGUAACCCCGGCAGAUAGCGCGAUCACGCGCAUCCCCCGAAAGGGAAUCGGGUUAAGAU UUCCCGAGCCGGGAUGUGGCGGUUGACGGCGACGUUAGGAAGUCCGGAGACGCCGGCGGGGGCCUCGGGAAGAGUUAUCU UUUCUGCUUAACGGCCUGCCAACCCUGGAAACGGUUCAGCCGGAGGUAGGGUCCAGUGGCCGGAAGAGCACCGCACGUCG CGCGGUGUCCGGUGCGCCCCCGGCGGCCCAUGAAAAUCCGGAGGACCGAGUACCGUUCACGCCCGGUCGUACUCAUAA (OMC)CG(OMC)AUCA(OMG)GUCU(OMC)CAAGGUGAAC(A2M)GCCUCUGGCCAAUGGAACAA(OMU)GUAGGCAAGG GAAG(PSU)CGGCAAAACGGAUCCGUAACUUCGGGAAAAGGAUUGGCUCUGAGGACUGGGCUCGGGGGUCCCGGCCCCGA ACCCGUCGGCUGUCGGCGGAUUGCUCGAGCUGCUCACGCGGCGAGAGCGGGUCGCCGCGUGCCGGCCGGGGGACGGACCG GGAAUCGCCCCUUCGGGGGCUUUCCCCGAGCAUGAAACAGUCGACUCAGAACUGG(OMU)ACGGACAAG(OMG)(OMG)G (A2M)AUCCGAC(PSU)G(PSU)UUAAUUAAAACAAAGCAUUGCGAUGGUCCUCGCGGAUGCUGACGCAAUGUGAUU (PSU)CUGCC(OMC)AGUGCUCUGAAUG(PSU)CAAAGUGA(A2M)GAAA(PSU)UCAACCAAGC(OMG)CGGGUAAACG GCGGGAGUAACUAUGACUCUCUUAAGGUAGC(5MC)AA(A2M)UGCCUC(OMG)UCAU(OMC)UAAUUAGUGACGCGCAU GAA(PSU)GGA(PSU)UA(A2M)CGAGAUUCCCACUGU(OMC)CCUGUCUAC(OMU)A(PSU)CCAGCGAAACCACAG (OMC)CAAGGGAACGGGCUUGGCGGAAUCA(OMG)CGG(OMG)GAAAGAAGACCCU(OMG)(OMU)UGAGC(PSU)UGAC (OMU)CUAGUCCGAC(PSU)UUGUGAAAUGACUUGAGAGGUGUAGGAUAAGUGGGAGCCCUCACGGGCGCAAGUGAAAUA CCACUACUUUUAACGUUAUUUUACUUA(PSU)UCCGUGGGUCGGAAGCGGGGCAUGUCCCCUCCUUUUGGCUCCAAGGCC CGGUCUUACCGGGCCGAUCCGGGCGGAAGACAUUGUCAGGUGGGGAGUU(PSU)GGCUG(OMG)GGCGGCACAUCUGUUA AAAG(A2M)UAACGCAGG(OMU)(OMG)UCCUAAGAUGAGCUCAACGAGAACAGAAAU(OMC)UCGUGUGGAACAAAAGG GUAAAAGCUCGU(PSU)UGAU(OMU)CUGAUUUCCAG(OMU)ACGAA(OMU)ACGAACCG(PSU)GAAAGCGUGGCCUAU CGAUCCUUUAGAUCUUCGGAGUUUGAAGCUA(OMG)A(OMG)GUGUCAGAAAAGUUACCACAG(OMG)GAUAACUGGC (PSU)UGUGGCAGC(OMC)AAGCGUUCAUAGCGACG(PSU)UGCUUUUUGA(PSU)CCUU(5MC)GAUGUCGG(OMC) (PSU)CU(OMU)CCUAUCAUUGUGAAGCAGAAUUCACCA(A2M)GUGUU(OMG)GAU(OMU)(OMG)(PSU)UCACCCAC CA(A2M)UAGGGAACG(PSU)G(A2M)G(OMC)UGGG(UR3)U(PSU)AGA(OMC)CGUCGUGAGACAGGU(PSU)AGUU UUACCCUACUGA(PSU)GACAGUGUCGCGAUAGUAAUUCAACCUAGUACGAGAGGAACCGUUGAUUCACACAAUUGGUCA UCGCGCUUGGUUGAAAAGCCAGUGGCGCGAAGCUACCGUGUGCCGGAUU(A2M)UGAC(PSU)GAACGCCUCUAAGUCAG AAUCCAAGCUAGCAUGCGACGCCUGCGCCCGCCGCCCGCCCCGACCCACGUUAGGGGCGCUUGCGCCCCCAAGGGCCCGU GCCAUUGGCUAAGCCGGUCCGGCCGAAGUGCCGCGGCCGGCCGCCUCGAAGCUCCCUUCCCAACGGGCGGUGGGCUGAAU CCUUU(OMG)CAGACGAC(OMU)UAAAUACGCGACGGGGCAUUGUAAGUGGCAGAGUGGCCUUGCUGCCACGAUCCACUG AGAUCCAGCCCCAUGUCGCACGGAUUCGU XR_006476295.1 5S rRNA Triticum aestivum 0.038411777 1 GGAUGCGAUCAUACCAGCACUAAGGCAUCGGAUCCCGUCAGAACUCCGAAGUUAAGCGUGCUUGGGCGAGAGUAGUACAA GGAUGGGUGACCUCUUGGGAAGUCCUCGUGUUGCAUUCC X06094.1 5.8S rRNA Triticum aestivum 0.050953305 1 CGACUCUCGGCAACGGA(PSU)AUCUCGGCUCUCGCAUCGAUGAAG(A2M)ACGUAGCGAAAUGCGAUACCUGGUGUGAA U(PSU)(OMG)CAGAAUCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAGGCCACUCGGCCGAGGGCACGCCU GCCUGGGCGUCACG AF438188.1 Ribosomal protein L2 C-terminal domain-containing protein Triticum aestivum 0.028251520999999998 1 LEVO MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDVIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAE GMYTGQFVYCGRRATLSVGNVLPLRSVPEGGVICNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPS SCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA RRTGRLRGQAAASAAKADKAT W5ECL2 Ribosomal protein L3 Triticum aestivum 0.044262797 1 LEVO MSHRKFEHPRHGSLGFLPRKRCSRHRGKVKSFPKDDQQKPCHLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIIE TPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEDVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQLQLEKMKKYATIV RVIAHTQIRKMKGLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKDEMVDIIGVTKGKGYEGVVTRWGVTR LPRKT(HIC)RGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKIYKMGKSGQESHEACTEFDRTEKDITPMGGFP HYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQKFYG Q7X744 60S ribosomal protein L4 C-terminal domain-containing protein Triticum aestivum 0.044822043 1 LEVO MATQTRPLVSVKALEGDMATDNSSSLALAEVFRAPLRPDVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRI PRVPGGGTHRAGQGAFGNMCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISD SAESIEKTSQAIKILKQVGAYADAEKAKDSVGIRPGKGKMRNRRYINRKGPLIVYGTEGSKIVKAFRNLPGVDVANVERL NLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVKPLNKEVKRREKR KNPLKNVAAVLKLNPYFGTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSDYAEFDNFSKW LGVTQ Ribosomal protein L5 eukaryotic C-terminal domain-containing protein Triticum aestivum 0.035341051 1 LEVO MFWMDFQVFVKNQKTRAYSKRFQVKFKRRRQGKTDYRARLRLTNQDKNKYNTPKYRFVVRFTNKDVTAQIVYATIAGDIV MAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKCRDLDQEYEGNVEATGEDFSVEPADERRPFRALLDVGLIRTTT GNRVFGALKGALDGGLDIPHSDKRFAGFKKDEKQLDAEIHRKYIYGGHVADYMKSLADEEPEKYQSHFSEYIKKGIEADN MEALYKKVHAAIRADPTMAKSTKEPPKTHKRYNPKKLTYEQRKASLVERLNALNSSAGADVDEDDDE A0A3B6DD91 60S ribosomal protein L6 Triticum aestivum 0.025924109 1 LEVO SPDCRSASTEESPMAPTSKMALGIKRASRSHTYHRRGLWAIKAKHGGALPKAEKPAAVAEPKFYPADDVKPRTVSTRKPH PTKLRSTITPGTVLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNVQKFDDKYF AREKKTRAKKTEGELFESDKEATKNLPDFKKDDQKVIDAELIKAIDAVPDLKNYLGARFSLRDGDKPHEMTF A0A3B6QGW3 60S ribosomal protein uL30 Triticum aestivum 0.028161136999999996 1 LEVO MASEAAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVS PEAKLLFVVRIRGINAMHPKTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNK QRIPLANNKVIEEGLGKHNIICIEDLVHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINQLV RRMN A0A3B6DM38 60S ribosomal protein L7a Triticum aestivum 0.029407151999999995 1 LEVO MAPKRGGKAPVPAKKKTDKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALHQFTRTL DKNLATNLFKMLLKYRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVV WLPALCRKMEVPYCIVKGKSRLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQA KTKARERLIAKEAAQRMN A0A3B6RED0 Ribosomal protein L6 alpha-beta domain-containing protein Triticum aestivum 0.021301918 1 LEVO MKTILASETMEIPEEVTVKVSAKMISVTGPRGTLTRNFKHLNLDFQLQEGGRKLKVDAWFGTRKTMAAIRTAISHVQNLI TGVTKGFRYKMRFVYAHFPINASITAANKGIEIRNFLGEKKVRKVDMLDGVTILRSEKVKDEIVLDGNDIELVSRSAALI NQKCHVKNKDIRKFLDGIYVSDKGAIKEE A0A077RTE5 Ribosomal protein L10e/L16 domain-containing protein Triticum aestivum 0.024516866999999998 1 LEVO MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPSCVHLVSWEKENVSSEALEAARIACNKYMTKNA GKDAFHLRVRVHPYHVLRINKMLSCAGADRLQTGMRGAFGKPLGTCARVDIGQVLLSVRCKESNAVHADEALRRAKFKFP GRQKIIRSRKWGFTKFNRADYIKYKSEGRIVPDGVNAKLLGVHGPIAKRAPGQAILA A0A3B6HUM3 60S ribosomal protein L11 Triticum aestivum 0.020725115000000002 1 LEVO MSTEKKQLNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTIRGEKAMQ LLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGMKYDPSTGIYGMDFFVVLERAGYRVSRRRRCKARVGIHQRVTKED AMKWFQVKYEGVILNKSHAS A0A3B5XX39 60S ribosomal protein L13 Triticum aestivum 0.024170293 1 LEVO MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKNAVKIFPRPTSGPLRPIVQCQTRKYNMKARAGRGFTLEEL KSAGIPKKLAPTIGISVDHRRKNRSLEGMQSNIQRLKTYKAKLVIFPRRARKVKAGDSTPEELANATQVQGDYMPIARGE KRSVEVVKVTEEMKEFKAYGKLRVERMNQRQLGARQKKAAEAEKEEKK A0A3B6QBU0 Ribosomal protein L14e domain-containing protein Triticum aestivum 0.015490531 1 LEVO MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPDMVRCQMNFKRLSLTDIKIDIKRIPKKATLIKAMEEADV KTKWENSSWGKKLIVQKKRAALNDFDRFKVMLAKIKRGGAIRQELAKLKKEVAAA A0A3B6DGT8 Ribosomal protein L15 Triticum aestivum 0.024488666 1 LEVO MGAYKFVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRITRPTRPDRARRLGFKAKQGYVVYRIRVRRGGRKRPVPKGIV YGKPKHQGITQLKFQRNKRSVAEERAGRRLGGLRVLNSYWVNEDSTYKYFEVILVDVAHSAVRNDPRINWLCKPVHKHRE LRGLTSAGKKFRGLRGKGHRHHKNRPSRRATWKRNQTVSLRRYR W5FEX7 Ribosomal protein L13a Triticum aestivum 0.023581171999999997 1 LEVO MVSGSGVCAKRVVVDARHHMLGRLASIVAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLRKRMNTKPSHGPIHFRA PAKILWRTIRGMIPHKTARGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRE LEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAPIKY Q5I7L1 60S ribosomal protein uL22 Triticum aestivum 0.019525549 1 LEVO MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMSLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNG QGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKK EAESQIARKA W5FSM8 Ribosomal protein L18e/L15P domain-containing protein Triticum aestivum 0.021351284999999998 1 LEVO MGIDLVAGGRNKRTKRVAPKSDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFMSKTNRPPLSMRRLSNFMKGKEEKNIA VVVGTITDDMRIQEVPAMKVTALRFTETARARIINAGGECLTFDQLALRAPTGENTILLRGPKNAREAVRHFGKAPGVPH SHTKPYVRSKGRKFEKARGRRNSRGFKV A0A3B5ZQE8 Ribosomal protein L19 Triticum aestivum 0.024059663999999998 1 LEVO MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGK RRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFE AKRAKSKASRERKIARREERLAQGPRDHAPAPAAAAPAAAPKKAKK A0A3B6C2W3 60S ribosomal protein L18a Triticum aestivum 0.021296041 1 LEVO MVAHRFHQYQVVGRALPAPGDEQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKANGQMLAINEIFEKNPTTIKNYGIW LRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRAPCIQIIKTATVDFKLCKRDNTKQFHNSKIKFPLVYQKVRP PTRKLKTTYKATRPNLFM A0A3B5Z5M6 60S ribosomal protein L21 Triticum aestivum 0.018719800999999998 1 LEVO MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV GNRIIKKRIHVRVEHVQPSRCNEEFLQRKLNNDKLKAEAKVRGEVISTKRQPAGPKPGFMVEGTTIETVTPIPYDVVNDL KGGY F4YWL9 Genome assembly, chromosome: II Triticum aestivum 0.014372515999999998 1 LEVO MARGAAAAAAAAKGKKKGSVSFVIDCTKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKSKVTVTSDGAFS KRYLKYLTKKYLKKHNVRDWLRVIAANKERNVYELRYFNIAENEGEEED W5C5N9 Ribosomal protein L17 Triticum aestivum 0.014536206 1 LEVO GRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQ RKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV Q5I7K4 TRASH domain-containing protein Triticum aestivum 0.018293646 1 LEVO MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKDIHAEAAKKRRRTTKKP YSRSIVGATLEVIQKKRAEKPEVRDAAREAALEIKERIKKTKDEKKAKKAEVTKSQKSQGGKGAVQKGSKGPKIGGGGGK R A0A3B6ELC9 Genome assembly, chromosome: II Triticum aestivum 0.016920203 1 LEVO MAPKVAVAKKGDAKAQAAKVAKAVKSGSIKKTAKKIRTSVTFHRPKTLSKARDPKYPRISTPGRNKLDQYQILKYPLTTE SAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKIGII A0A1D5UQZ5 KOW domain-containing protein Triticum aestivum 0.01473538 1 LEVO MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRGTYKGREGKVVQVYRRRWVIH VERITREKVNGSTVNVGIHPSKVIVTKLKLDKDRKALLDRKARGRAA A0A3B6GQI2 60S ribosomal protein L27 Triticum aestivum 0.015615687 1 LEVO MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHI MPTRYTLDVDFKDVASGGPDALATRDKKVASCKAAKARLEERFKTGKNRWFFTKLRF A0A341XZK6 Ribosomal protein L18e/L15P domain-containing protein Triticum aestivum 0.016068989 1 LEVO MTTRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLSNRFYTPTVNVERLWS MVPSEKAAEAGGDKAPVVDVSQFGYFKVLGKGMLPEKPIVVKAKLISKIAEKKIKAAGGAVVLVA A0A3B6AUW8 60S ribosomal protein L29 Triticum aestivum 0.006994063 1 LEVO MAKSKNHTAHNQSYKAHRNGIKKPKRQRQASTKGMDPKFLRNLRYSRKHNVKAGEGEVEK A0A1D5RRD3 Ribosomal protein L7Ae/L30e/S12e/Gadd45 domain-containing protein Triticum aestivum 0.012372486999999998 1 LEVO MAPTKKAKKSGENINNKLQLVMKSGKYTLGYKTVLKTLRSSKGKLIILANNCPPLRKSEIEYYAMLAKISVHHFHGNNVD LGTACGKYYRVCCLSILDPGDSDIISTTTTTQ W4ZRU3 60S ribosomal protein L31 Triticum aestivum 0.014152364999999998 1 LEVO MSEKKRAPGPRKDEVVTREYTVNLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTNDVRIDVKLNKHIWSSGIRSVPRRVR VRIARKRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKVVEDED W5G990 60S ribosomal protein eL32 Triticum aestivum 0.015737636 1 LEVO MAVPLLTRKIVKKRVKHFKRAHSDRYIGLKQSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNV SELELLMMHNRTYCAEIAHNVSTKKRKDIVERAAQLDIVVTNKLARLRSQEDE A0A3B6SDD9 60S ribosomal protein eL33 Triticum aestivum 0.012684729999999998 1 LEVO MKGRQGQRVRLYVRGTILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHG NSGVVRAKFRSNLPPTSMGKKVRVFMYPSSI 60S ribosomal protein L34 Triticum aestivum 0.013798365 1 LEVO MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPTEYKRSRLSRNRRTVNRPYGG VLSGPAVRERIIRAFLVEEQKIVKKVLKIQKTKEKTTKS A0A3B6RFY8 60S ribosomal protein L35 Triticum aestivum 0.014401040999999998 1 LEVO MSSGKVKAGELWNKSKDDLTKQLAELKTELGQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYA PLDLRAKQTRAIRRRLSPDEKSRVLEKTKKRTVHFPQRKFAIKA Q8L805 60S ribosomal protein L36 Triticum aestivum 0.012594096999999999 1 LEVO MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKL GTHKRAKKKREEMSSVLRKMRSAGTGTEKKK A0A1D5S805 Ribosomal protein L37 Triticum aestivum 0.010765555 1 LEVO MTKGTGSFGKRRNKTHTLCIRCGRRSFHLQKSTCSSCGYPAARIRKYNWSVKAIRRKTTGTGRMRYMRHVPRRFKSNFRE GTEAAPRNRAAAN A0A1D6BC85 60S ribosomal protein L38 Triticum aestivum 0.008115617 1 LEVO MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVHDTDKANKLKQSLPPGLNVQEV A0A1D5W6Q2 Ribosomal protein L39 Triticum aestivum 0.006528786 1 LEVO MPSHKTFRIKQKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF Q5I7K7 Ubiquitin-like domain-containing protein Triticum aestivum 0.01482842 1 LEVO MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEP SLQALARKYNQEKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIKN A0A1D5XNC2 Genome assembly, chromosome: II Triticum aestivum 0.012152455 1 LEVO MVNVPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQT(MLZ)PVFHKKAKTTKKIVLKLQCQS CKHYSQRAIKRCKHFEIGGDKKGKGTSLF W5HX73 60S ribosomal protein L37a, expressed Triticum aestivum 0.010266146 1 LEVO MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVR STIRRLREQTEA D8L9P6 Ribosomal L28e/Mak16 domain-containing protein Triticum aestivum 0.016607375 1 LEVO MTTVPGSLVWELVKKNNCFLIKQFGNSNAKVQFSKEPNNLYNVHSYKFSGLANSKTVAVQPSAGEDKAVVLSTTKTKKQN TPAKLQHKTLMRKEFRKMAKSVKNQVCDNYYRPDLTKPALARLSAVYRSLQVSKSGIKKKNRQPTKL A0A3B5ZZN9 POTASSIUM ION 3.9098e-05 72 K MAGNESIUM ION 2.4305e-05 242 MG ZINC ION 6.5409e-05 3 ZN singleParticle particle 7.6 Quantifoil R2/2 COPPER 400 CARBON CONTINUOUS GLOW DISCHARGE ETHANE 100 289 FEI VITROBOT MARK IV

The sample is the large subunit of wheat ribosome

FEI TITAN KRIOS OTHER OTHER FIELD EMISSION GUN 300 2.7 1.5 3.0 75000.0 FEI TITAN KRIOS AUTOGRID HOLDER NITROGEN FEI FALCON III (4k x 4k) 44.6 1 4V7E 2.84 FSC 0.143 CUT-OFF 105563 NOT APPLICABLE NOT APPLICABLE emd_36331.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 385.2 385.2 385.2 90.0 90.0 90.0 X Y Z -0.34478533 0.72139686 0.00070451264 0.025131881 1.07 1.07 1.07 0.09 AUTHOR ::::EMDATABANK.org::::EMD-36331:::: emd_36331_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 385.2 385.2 385.2 90.0 90.0 90.0 X Y Z -0.015835326 0.13850148 0.00070390967 0.010280521 1.07 1.07 1.07 AUTHOR ::::EMDATABANK.org::::EMD-36331:::: emd_36331_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 360 360 360 0 0 0 360 360 360 385.2 385.2 385.2 90.0 90.0 90.0 X Y Z -0.015121905 0.13433862 0.0007051156 0.010283346 1.07 1.07 1.07 AUTHOR ::::EMDATABANK.org::::EMD-36331::::