2026-08-12 REL PDBc INITIAL_RELEASE REPOSITORY INITIAL_RELEASE REPOSITORY EXPERIMENTAL_SUMMARY em_admin _em_admin.last_update REMEDIATION REPOSITORY Metalloprotein remediation STRUCTURE_SUMMARY chem_comp_atom em_admin pdbx_entry_details pdbx_modification_feature pdbx_nonpoly_atom_coordination pdbx_nonpoly_atom_coordination_sphere pdbx_nonpoly_atom_coordination_sphere_order pdbx_struct_conn_angle pdbx_validate_chiral struct_conn _chem_comp_atom.pdbx_stereo_config _em_admin.last_update _pdbx_entry_details.has_protein_modification PDBj PDBc 2023-04-10 2023-10-25 2023-10-25 2026-08-12 Chinese Academy of Sciences 2021YFA1300403 China FCP heterodimer, Lhca2, and Lhcf5 together as the M1 side binds to the PSII core in the diatom Thalassiosira pseudonana Li Z Feng Y Wang W Shen JR FCP, heterodimer, PHOTOSYNTHESIS Feng Y Li Z Li X Shen L Liu X Zhou C Zhang J Sang M Han G Yang W Kuang T Wang W Shen JR Structure of a diatom photosystem II supercomplex containing a member of Lhcx family and dimeric FCPII. Sci Adv US 9 eadi8446 eadi8446 2023 37878698 doi:10.1126/sciadv.adi8446 2375-2548 8j0d FULLOVERLAP EMDB EMD-35899 associated EM volume
FCP heterodimer, Lhca2, and Lhcf5 together as the M1 side binds to the PSII core in the diatom Thalassiosira pseudonana
 M1 local refinement in the PSII-FCPII from the Thalassiosira pseudonana at 3.19 angstrom M1 local refinement in the PSII-FCPII from the Thalassiosira pseudonana at 3.19 angstrom 0 1 2 3 4 Thalassiosira pseudonana Fucoxanthin chl a/c protein, lhca clade Thalassiosira pseudonana 0.02410099 1 LEVO WNEAPRALPFGSAPPTLDGSLVGDVGFDPIGFSTAPFASFNNPIYQEGNFMTDVQWLREAELTHGRIAQLAVVGFIWPAL FGTFPGNENFGGADAYSYVNPLEAINHIPSLAIYQIVGGMAWVEYQRVQRIKEQGKDRISGDIGLAYPGGWNPFNINYSP EEYAEKQLQEIKHCRLAMLGAFGLFFQALNSGEDIVSQLSPAFAAPEYAAKAGYFLPQGI B8BUU4 Fucoxanthin-chlorophyll a-c binding protein, plastid Thalassiosira pseudonana 0.017745099999999996 1 LEVO ENEIGVLPPTGFFDPAGLSDGISQEKFDSYRLAELKHGRAAMLAVLGYVAPETYRFGYDLIPGELSTNDIPNGVAAIKAI PFGGWAQMIAFVGCVETYGWFTSPTGVLDLPDDILAKRQTAELQHGRLAMLAFLELIRHDSQNLAQPGFDGLDNLITGLP FLY B8BVI1 Fucoxanthin chlorophyll a/c protein 6 Thalassiosira pseudonana 0.017614866999999996 1 LEVO ESEIGAQAPLGFWDPLGFLDRADQETFDRLRYVELKHGRIAQLAFVGNLITRAGYHLPGDISLGRAFADVPNGIAAINGP DAISTAALLQTLAFIGFLETRVMIDATGESQFRGDFRNGFDFGWDKQSPEWQTNKRAIELNQGRAAMMGILGLMMHEQVG B8BX92 Fucoxanthin chlorophyll a/c protein 5 Thalassiosira pseudonana 0.018380953000000002 1 LEVO FENELGAQPPLGFFDPLGMLDEAGQARFDRLRYVELKHGRICQLAFLGNIITRAGIHLPGAISLDGTKFSDIGNGWAGSF EVPKDGALQILFFVGFLELFVMKDVTGEGEFVGDFRNGALDFGWDSFSEETKLQKRAIELNNGRAAMMGILGLMVHEQLG GELPIVGQ B8CEV5 CHLOROPHYLL A 0.000893489 39 CLA Chlorophyll c1 0.000610941 3 KC1 (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate 0.0006589059999999999 17 A86 (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol 0.000582855 2 DD6 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE 0.0007871579999999999 3 LMG 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE 0.00072297 4 LHG DIGALACTOSYL DIACYL GLYCEROL (DGDG) 0.0009492989999999999 1 DGD Chlorophyll c2 0.000608926 3 KC2 DODECYL-BETA-D-MALTOSIDE 0.000510615 2 LMT singleParticle particle 6.5 ETHANE FEI TITAN KRIOS FLOOD BEAM BRIGHT FIELD FIELD EMISSION GUN 300 1.0 2.0 GATAN K3 BIOQUANTUM (6k x 4k) 60.0 1 PHASE FLIPPING AND AMPLITUDE CORRECTION 3.19 FSC 0.143 CUT-OFF 97098 MAXIMUM LIKELIHOOD MAXIMUM LIKELIHOOD emd_35899.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 440.0 440.0 440.0 90.0 90.0 90.0 X Y Z -0.24929167 0.5981119 -0.0006765118 0.009176806 0.88 0.88 0.88 0.12 AUTHOR emd_35899_half_map_2.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 440.0 440.0 440.0 90.0 90.0 90.0 X Y Z -0.9010842 0.8589018 -0.0000914927 0.08271268 0.88 0.88 0.88 AUTHOR emd_35899_half_map_1.map.gz 1 IMAGE STORED AS FLOATING POINT NUMBER (4 BYTES) 500 500 500 0 0 0 500 500 500 440.0 440.0 440.0 90.0 90.0 90.0 X Y Z -0.7732333 0.7941833 -0.000066152985 0.08273941 0.88 0.88 0.88 AUTHOR